Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009151.1 Corchorus capsularis cultivar CVL-1 contig09172, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23301
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--87 Score: 174
Period size: 2 Copynumber: 43.5 Consensus size: 2
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
43 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
85 CT C
1 CT C
88 CTTTTTGTTT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 85 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:492 original size:20 final size:20
Alignment explanation
Indices: 467--508 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
457 AAGTTACTGC
467 GAAAGGCAATTGGATAATTG
1 GAAAGGCAATTGGATAATTG
487 GAAAGGCAATTGGATAATTG
1 GAAAGGCAATTGGATAATTG
507 GA
1 GA
509 TTGAGACAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.31, T:0.24
Consensus pattern (20 bp):
GAAAGGCAATTGGATAATTG
Found at i:12423 original size:22 final size:22
Alignment explanation
Indices: 12398--12451 Score: 54
Period size: 27 Copynumber: 2.2 Consensus size: 22
12388 ATTTTCTTAT
*
12398 ATATTGATAATAAACTAAATTA
1 ATATTGAGAATAAACTAAATTA
12420 ATATTTAAATGAGAATAAACTAAATTA
1 ATA--T---TGAGAATAAACTAAATTA
12447 ATATT
1 ATATT
12452 TAAAGAGGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 10
0.70 0.03 0.27
Matches are distributed among these distances:
22 4 0.15
24 1 0.04
25 1 0.04
27 20 0.77
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.37
Consensus pattern (22 bp):
ATATTGAGAATAAACTAAATTA
Found at i:15599 original size:114 final size:110
Alignment explanation
Indices: 15368--15622 Score: 354
Period size: 114 Copynumber: 2.3 Consensus size: 110
15358 CCAATTCTTT
* * *
15368 TTCTTTCTTTTTGGTCGATTCATCGTCTT-TTGGCCTCGGAGTGGTAGTGGCTCCAAGATCATGG
1 TTCTTTCTTTTTGGTCGATTCATCGTCTTCTCGGCCTAGGAGTGGCAGTGGCTCCAAGATCATGG
* *
15432 GCTTTGCTTTTCTTCTCAAGCTGGGTGGTGGTGGTGGGCATTGGCAA
66 GCTTTGCTTTCCTTCTCAAGCTGGGTGGTGGTGGTAGG-A-TGGCAA
15479 TTCTTTCTTTTTGGTCGATTCATCGTCTTCCTCCGGCCTAGGAGTGGCAGTGGCTCCAAGATCAT
1 TTCTTTCTTTTTGGTCGATTCATCGTCTT-CT-CGGCCTAGGAGTGGCAGTGGCTCCAAG---AT
* *
15544 CATGGGCTTTGCTTTCCTTCTCAAGCTGGGTGGTGGTGG-AGG-TGGGATC
61 CATGGGCTTTGCTTTCCTTCTCAAGCTGGGTGGTGGTGGTAGGATGGCA-A
15593 TTCTTTCTTTTTGGTCGATTCATCGTCTTC
1 TTCTTTCTTTTTGGTCGATTCATCGTCTTC
15623 GGCAGCTATG
Statistics
Matches: 130, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
111 29 0.22
113 6 0.05
114 53 0.41
116 2 0.02
117 40 0.31
ACGTcount: A:0.11, C:0.21, G:0.28, T:0.39
Consensus pattern (110 bp):
TTCTTTCTTTTTGGTCGATTCATCGTCTTCTCGGCCTAGGAGTGGCAGTGGCTCCAAGATCATGG
GCTTTGCTTTCCTTCTCAAGCTGGGTGGTGGTGGTAGGATGGCAA
Found at i:17833 original size:19 final size:20
Alignment explanation
Indices: 17806--17843 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
17796 TACTATTATT
17806 TTTTGAATTT-AATATTTTAC
1 TTTTGAATTTCAAT-TTTTAC
17826 TTTT-AATTTCAATTTTTA
1 TTTTGAATTTCAATTTTTA
17844 AATGTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTGAATTTCAATTTTTAC
Found at i:17924 original size:22 final size:22
Alignment explanation
Indices: 17899--18024 Score: 80
Period size: 22 Copynumber: 5.7 Consensus size: 22
17889 CTCTATGTGG
17899 TTATCAAAATTTCATAAGATGA
1 TTATCAAAATTTCATAAGATGA
* * * *
17921 TTATTATAATTTCATGAGGA-GG
1 TTATCAAAATTTCAT-AAGATGA
* * *
17943 TTATCAAAATTCCAT-AGCGTGG
1 TTATCAAAATTTCATAAG-ATGA
* * *
17965 TTACCAAAATTTCATATGGAAG-
1 TTATCAAAATTTCATA-AGATGA
*
17987 TTATCAAAATTTCAT-AGCGTGA
1 TTATCAAAATTTCATAAG-ATGA
*
18009 TTACCAAAATTTCATA
1 TTATCAAAATTTCATA
18025 GGATAAGGTT
Statistics
Matches: 77, Mismatches: 19, Indels: 15
0.69 0.17 0.14
Matches are distributed among these distances:
20 2 0.03
21 1 0.01
22 69 0.90
23 4 0.05
24 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (22 bp):
TTATCAAAATTTCATAAGATGA
Found at i:18017 original size:66 final size:66
Alignment explanation
Indices: 17895--18025 Score: 149
Period size: 66 Copynumber: 2.0 Consensus size: 66
17885 TTGTCTCTAT
* * * * * *
17895 GTGGTTATCAAAATTTCATAAGATGATTATTATAATTTCATGAGGAGGTTATCAAAATTCCATAG
1 GTGGTTACCAAAATTTCATAAGAAGATTATCAAAATTTCATGAGGAGATTACCAAAATTCCATAG
17960 C
66 C
* * *
17961 GTGGTTACCAAAATTTCATATGGAAG-TTATCAAAATTTCAT-AGCGTGATTACCAAAATTTCAT
1 GTGGTTACCAAAATTTCATA-AGAAGATTATCAAAATTTCATGAG-GAGATTACCAAAATTCCAT
18024 AG
64 AG
18026 GATAAGGTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
65 2 0.04
66 49 0.91
67 3 0.06
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (66 bp):
GTGGTTACCAAAATTTCATAAGAAGATTATCAAAATTTCATGAGGAGATTACCAAAATTCCATAG
C
Found at i:18025 original size:22 final size:22
Alignment explanation
Indices: 17947--18025 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
17937 AGGAGGTTAT
* *
17947 CAAAATTCCATAGCGTGGTTAC
1 CAAAATTTCATAGCGTGATTAC
* *
17969 CAAAATTTCATATG-G-AAGTTAT
1 CAAAATTTCATA-GCGTGA-TTAC
17991 CAAAATTTCATAGCGTGATTAC
1 CAAAATTTCATAGCGTGATTAC
18013 CAAAATTTCATAG
1 CAAAATTTCATAG
18026 GATAAGGTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
21 1 0.02
22 44 0.94
23 2 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (22 bp):
CAAAATTTCATAGCGTGATTAC
Found at i:18050 original size:24 final size:22
Alignment explanation
Indices: 17970--18072 Score: 66
Period size: 22 Copynumber: 4.6 Consensus size: 22
17960 CGTGGTTACC
* * *
17970 AAAATTTCATATGGAAG-TTATC
1 AAAATTTCTTA-GGTAGATTATT
* **
17992 AAAATTTCATAGCGT-GATTACC
1 AAAATTTCTTAG-GTAGATTATT
* *
18014 AAAATTTCATAGGATAAGGTTATT
1 AAAATTTCTTAGG-T-AGATTATT
*
18038 AAAATTTCTTAGGTTGATTATT
1 AAAATTTCTTAGGTAGATTATT
*
18060 GAAATTTCTTAGG
1 AAAATTTCTTAGG
18073 GTGGTTAATT
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
21 3 0.04
22 47 0.70
23 1 0.01
24 16 0.24
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
AAAATTTCTTAGGTAGATTATT
Found at i:18057 original size:46 final size:44
Alignment explanation
Indices: 17898--18024 Score: 159
Period size: 44 Copynumber: 2.9 Consensus size: 44
17888 TCTCTATGTG
* ** * *
17898 GTTATCAAAATTTCATAAG-ATGATTATTATAATTTCATGA-GGAG
1 GTTATCAAAATTTCAT-AGCGTGATTACCAAAATTTCAT-ATGGAA
* *
17942 GTTATCAAAATTCCATAGCGTGGTTACCAAAATTTCATATGGAA
1 GTTATCAAAATTTCATAGCGTGATTACCAAAATTTCATATGGAA
17986 GTTATCAAAATTTCATAGCGTGATTACCAAAATTTCATA
1 GTTATCAAAATTTCATAGCGTGATTACCAAAATTTCATA
18025 GGATAAGGTT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
43 3 0.04
44 69 0.96
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (44 bp):
GTTATCAAAATTTCATAGCGTGATTACCAAAATTTCATATGGAA
Found at i:18140 original size:22 final size:21
Alignment explanation
Indices: 18115--18466 Score: 144
Period size: 22 Copynumber: 15.8 Consensus size: 21
18105 ATCAAAGATA
*
18115 TTATCAAAATGTCATAGCGAGG
1 TTATCAAAATTTCATAG-GAGG
* *
18137 TTAT-AAGAATTTTATAGTGTGG
1 TTATCAA-AATTTCATAG-GAGG
*
18159 TTAACAAAATTTCATTAGGAGG
1 TTATCAAAATTTCA-TAGGAGG
* *
18181 TTA-CTAATATTTCATGGGGAGG
1 TTATC-AAAATTTCAT-AGGAGG
* *
18203 TTATCAAAATTTTATAGTATGG
1 TTATCAAAATTTCATAGGA-GG
*
18225 TTATCAAAATTTCATATGAAGG
1 TTATCAAAATTTCATA-GGAGG
*
18247 TTATAAAAGTTTCAATTTCATAAGGA-G
1 TTAT-CAA-----AATTTCAT-AGGAGG
* * *
18274 -TACCAAAATTTGATAGAAGG
1 TTATCAAAATTTCATAGGAGG
* *
18294 TTATC-AAATCTCATA-GAGT
1 TTATCAAAATTTCATAGGAGG
* *
18313 TATAATCGAAATTTCATAGAGATCAGA
1 T-T-ATCAAAATTTCATAG-G---AGG
* * *
18340 TTATCAAAAATTCATAGTATTG
1 TTATCAAAATTTCATAGGA-GG
*
18362 TTATCAAAATTTCAAAGCGAGG
1 TTATCAAAATTTCATAG-GAGG
* *
18384 TTATCAAAATTACATA-TATGTG
1 TTATCAAAATTTCATAGGA-G-G
*
18406 ATTATCAAAATTTCATAGAATGG
1 -TTATCAAAATTTCATAGGA-GG
* * *
18429 TCAAT-AAAATTTTATAAAGAGG
1 T-TATCAAAATTTCAT-AGGAGG
18451 TTATCAAAATTTCATA
1 TTATCAAAATTTCATA
18467 AAAATGTTAT
Statistics
Matches: 248, Mismatches: 48, Indels: 69
0.68 0.13 0.19
Matches are distributed among these distances:
19 6 0.02
20 18 0.07
21 17 0.07
22 139 0.56
23 31 0.12
24 4 0.02
25 15 0.06
26 3 0.01
27 4 0.02
28 10 0.04
29 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (21 bp):
TTATCAAAATTTCATAGGAGG
Found at i:18260 original size:66 final size:66
Alignment explanation
Indices: 18133--18260 Score: 172
Period size: 66 Copynumber: 1.9 Consensus size: 66
18123 ATGTCATAGC
* * *
18133 GAGGTTATAAGAATTTTATAGTGTGGTTAACAAAATTTCATTAGGAGGTTACTAATATTTCATGG
1 GAGGTTATAAGAATTTTATAGTATGGTTAACAAAATTTCATTAGAAGGTTACTAAAATTTCATGG
18198 G
66 G
*
18199 GAGGTTATCAA-AATTTTATAGTATGGTTATCAAAATTTCA-TATGAAGGTTA-TAAAAGTTTCA
1 GAGGTTAT-AAGAATTTTATAGTATGGTTAACAAAATTTCATTA-GAAGGTTACTAAAA-TTTCA
18261 ATTTCATAAG
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
65 6 0.11
66 47 0.85
67 2 0.04
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (66 bp):
GAGGTTATAAGAATTTTATAGTATGGTTAACAAAATTTCATTAGAAGGTTACTAAAATTTCATGG
G
Found at i:18414 original size:67 final size:67
Alignment explanation
Indices: 18338--18466 Score: 163
Period size: 67 Copynumber: 1.9 Consensus size: 67
18328 ATAGAGATCA
* * * *
18338 GATTATCAAAAATTCATAGTATTGT-TATCAAAATTTCA-AAGCGAGGTTATCAAAATTACATAT
1 GATTATCAAAAATTCATAGAATGGTCAAT-AAAATTTCATAA-AGAGGTTATCAAAATTACATAT
18401 ATGT
64 ATGT
* * *
18405 GATTATCAAAATTTCATAGAATGGTCAATAAAATTTTATAAAGAGGTTATCAAAATTTCATA
1 GATTATCAAAAATTCATAGAATGGTCAATAAAATTTCATAAAGAGGTTATCAAAATTACATA
18467 AAAATGTTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 49 0.92
68 4 0.08
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (67 bp):
GATTATCAAAAATTCATAGAATGGTCAATAAAATTTCATAAAGAGGTTATCAAAATTACATATAT
GT
Found at i:18467 original size:22 final size:22
Alignment explanation
Indices: 18361--18486 Score: 96
Period size: 22 Copynumber: 5.7 Consensus size: 22
18351 TCATAGTATT
*
18361 GTTATCAAAATTTCA-AAGCGAG
1 GTTATCAAAATTTCATAA-AGAG
* * *
18383 GTTATCAAAATTACATATATGTG
1 GTTATCAAAATTTCATA-AAGAG
* *
18406 ATTATCAAAATTTCATAGAA-TG
1 GTTATCAAAATTTCATA-AAGAG
* *
18428 GTCAAT-AAAATTTTATAAAGAG
1 GT-TATCAAAATTTCATAAAGAG
* *
18450 GTTATCAAAATTTCATAAAAAT
1 GTTATCAAAATTTCATAAAGAG
*
18472 GTTATCAAATTTTCA
1 GTTATCAAAATTTCA
18487 AAATGTGATT
Statistics
Matches: 83, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
21 4 0.05
22 57 0.69
23 21 0.25
24 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.36
Consensus pattern (22 bp):
GTTATCAAAATTTCATAAAGAG
Found at i:18683 original size:44 final size:43
Alignment explanation
Indices: 18611--18714 Score: 108
Period size: 45 Copynumber: 2.3 Consensus size: 43
18601 TCAAGGATGA
18611 TATCAAAATTTCATAGTTTAATTTTC-AAATTTTCATAAGAGG-G-T
1 TATCAAAATTTCATAGTTTAA--TTCAAAATTTTCAT-AG-GGAGAT
18655 TATCAAAATTTCATAGTATGTAGA-TCAAAATTTTCATAGGGAGAT
1 TATCAAAATTTCATAGT-T-TA-ATTCAAAATTTTCATAGGGAGAT
*
18700 TAACAAAATTTCATA
1 TATCAAAATTTCATA
18715 ATGAGGTTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 11
0.82 0.02 0.17
Matches are distributed among these distances:
43 2 0.04
44 22 0.42
45 26 0.49
46 2 0.04
47 1 0.02
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (43 bp):
TATCAAAATTTCATAGTTTAATTCAAAATTTTCATAGGGAGAT
Found at i:18714 original size:22 final size:22
Alignment explanation
Indices: 18592--19003 Score: 132
Period size: 22 Copynumber: 18.6 Consensus size: 22
18582 TTATGGAATA
18592 ATCAAAATTTCA-A-GGATGA-T
1 ATCAAAATTTCATAGGGA-GATT
**
18612 ATCAAAATTTCATAGTTTA-ATT
1 ATCAAAATTTCATAG-GGAGATT
* *
18634 TTCAAATTTTCATAAGAGG-G-TT
1 ATCAAAATTTCAT-AG-GGAGATT
* *
18656 ATCAAAATTTCATA-GTATG-TAG
1 ATCAAAATTTCATAGGGA-GAT-T
18678 ATCAAAATTTTCATAGGGAGATT
1 ATCAAAA-TTTCATAGGGAGATT
* ** *
18701 AACAAAATTTCATAATGAGGTT
1 ATCAAAATTTCATAGGGAGATT
** *
18723 ATCAAAAAATCATAGGGAGGTT
1 ATCAAAATTTCATAGGGAGATT
* * * *
18745 ATCAAGATTTCGTA-AGAAAGTT
1 ATCAAAATTTCATAGGGAGA-TT
* * *
18767 ATTAAAATTTTATAGGGAGGTTT
1 ATCAAAATTTCATAGGGA-GATT
* *
18790 ATCAAAATTTTATAGGAAGATTT
1 ATCAAAATTTCATAGGGAGA-TT
* * * *
18813 ATTAAAATTTCATAGCGTGGTT
1 ATCAAAATTTCATAGGGAGATT
* ** *
18835 ATCACAATTTCATAATGTGATT
1 ATCAAAATTTCATAGGGAGATT
* * *
18857 ATCAAAATTTCAGAGTGTGATT
1 ATCAAAATTTCATAGGGAGATT
* *
18879 A-CTAATAA-TTCATA-TGAAAGTT
1 ATC-AA-AATTTCATAGGGAGA-TT
* * * ** *
18901 TTTAAATTTTCATAACGTGATT
1 ATCAAAATTTCATAGGGAGATT
* * * *
18923 ATCAATATATCATATGGAGGTT
1 ATCAAAATTTCATAGGGAGATT
* ** *
18945 AT-AAACATCTCATAGTGTTGGTT
1 ATCAAA-ATTTCATAG-GGAGATT
*
18968 ATCAAAATTTCATTGGGA-AGTT
1 ATCAAAATTTCATAGGGAGA-TT
18990 ATCAAAATTTCATA
1 ATCAAAATTTCATA
19004 ATGAGGTCTT
Statistics
Matches: 284, Mismatches: 82, Indels: 50
0.68 0.20 0.12
Matches are distributed among these distances:
19 1 0.00
20 12 0.04
21 14 0.05
22 180 0.63
23 71 0.25
24 6 0.02
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (22 bp):
ATCAAAATTTCATAGGGAGATT
Found at i:18755 original size:44 final size:44
Alignment explanation
Indices: 18652--18849 Score: 130
Period size: 45 Copynumber: 4.4 Consensus size: 44
18642 TTCATAAGAG
* * * **
18652 GGTTATCAAAATTTCAT-AGTATGTAGATCAAAATTTTCATAGGGA
1 GGTTATCAAAATTTCATAAGAAAGT-TATCAAAA-AATCATAGGGA
* * *
18697 GATTAACAAAATTTCATAATG-AGGTTATCAAAAAATCATAGGGA
1 GGTTATCAAAATTTCATAA-GAAAGTTATCAAAAAATCATAGGGA
* * * ** *
18741 GGTTATCAAGATTTCGTAAGAAAGTTATTAAAATTTTATAGGGA
1 GGTTATCAAAATTTCATAAGAAAGTTATCAAAAAATCATAGGGA
* * * * ** * *
18785 GGTTTATCAAAATTTTATAGGAAGATTTATTAAAATTTCATAGCGT
1 GG-TTATCAAAATTTCATAAGAA-AGTTATCAAAAAATCATAGGGA
*
18831 GGTTATCACAATTTCATAA
1 GGTTATCAAAATTTCATAA
18850 TGTGATTATC
Statistics
Matches: 122, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
43 1 0.01
44 44 0.36
45 52 0.43
46 24 0.20
47 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (44 bp):
GGTTATCAAAATTTCATAAGAAAGTTATCAAAAAATCATAGGGA
Found at i:18791 original size:23 final size:23
Alignment explanation
Indices: 18765--18827 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
18755 CGTAAGAAAG
* *
18765 TTATTAAAATTTTATAGGGAGGT
1 TTATTAAAATTTTATAGGAAGAT
*
18788 TTATCAAAATTTTATAGGAAGAT
1 TTATTAAAATTTTATAGGAAGAT
*
18811 TTATTAAAATTTCATAG
1 TTATTAAAATTTTATAG
18828 CGTGGTTATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.43
Consensus pattern (23 bp):
TTATTAAAATTTTATAGGAAGAT
Found at i:19188 original size:2 final size:2
Alignment explanation
Indices: 19183--19207 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
19173 ATAGAGAGAT
19183 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
19208 TCTTTTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.