Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009157.1 Corchorus capsularis cultivar CVL-1 contig09178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28444

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1624--1655
16
2.1
16
94
5
57
18
9
0
71
1.12
2046--2098
17
3.1
16
76
10
52
30
7
5
56
1.50
3433--3591
62
2.5
63
87
8
223
30
11
9
49
1.70
6951--7326
49
7.8
49
81
5
231
32
16
28
22
1.96
6996--7331
49
6.9
48
84
4
354
30
16
29
23
1.96
10274--10323
20
2.5
20
96
3
91
48
30
10
12
1.73
11333--11368
13
2.6
14
86
8
56
50
13
2
33
1.57
11378--11423
2
24.0
2
82
8
60
52
2
0
45
1.13
11455--11526
14
5.1
14
81
10
76
65
0
11
23
1.25
11769--11830
31
2.0
31
90
0
97
32
14
12
40
1.84
11846--11883
11
3.7
11
80
20
55
76
0
0
23
0.79
11837--11883
19
2.5
19
92
0
85
76
0
0
23
0.78
16524--16587
27
2.5
24
82
10
74
46
4
0
48
1.23
19657--20106
225
2.0
225
99
0
891
31
12
18
37
1.89
20289--20338
24
2.1
24
96
0
91
18
34
10
38
1.84
20366--20399
16
2.1
16
100
0
68
11
23
17
47
1.81
25269--25305
12
2.9
12
92
8
56
89
0
10
0
0.49
25269--25305
16
2.3
16
90
0
56
89
0
10
0
0.49
27769--27814
23
1.9
25
86
8
69
43
2
0
54
1.12

Tables:   1

The End!