genome.fa.s9159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009159.1 Corchorus capsularis cultivar CVL-1 contig09180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46488

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224--261	19	2.0	20	94	5	69	31	10	7	50	1.66
3118--3274	74	2.1	74	92	0	260	40	9	29	20	1.84
11124--11199	39	1.9	39	100	0	152	30	21	21	27	1.98
26059--26106	20	2.3	21	89	3	71	18	8	6	66	1.39
32411--32471	30	2.0	30	100	0	122	18	29	19	32	1.95
38779--38821	16	2.7	16	88	0	68	39	41	11	6	1.68
39597--39651	23	2.4	23	93	0	92	27	47	23	1	1.62
39618--39650	17	1.9	17	93	0	57	27	48	21	3	1.64
39622--39698	32	2.4	32	86	4	102	37	41	15	5	1.70
39640--39713	16	4.8	16	91	5	116	40	40	13	5	1.67
39640--39713	31	2.4	30	88	6	112	40	40	13	5	1.67
39597--39666	6	11.5	6	75	14	63	30	45	21	2	1.66
40874--40920	21	2.3	20	78	7	51	65	8	8	17	1.44
42243--42282	19	2.2	18	86	4	53	30	20	5	45	1.72
43964--44785	48	16.9	50	82	6	693	36	17	26	20	1.94
43963--44788	50	17.0	47	81	9	615	36	16	26	20	1.94
44789--45530	47	17.1	41	73	17	463	38	20	25	15	1.91
44916--45336	41	9.4	46	74	15	285	40	20	23	15	1.91
44896--45389	88	5.6	88	77	10	420	39	20	24	14	1.90
44789--45530	129	5.7	122	72	18	470	38	20	25	15	1.91
44795--45530	176	4.2	173	78	11	659	38	20	25	15	1.92
45317--45431	39	2.9	40	84	8	139	35	24	27	12	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45235--45490	126	2.0	126	84	5	331	37	23	26	12	1.90
46031--46150	49	2.4	50	76	6	111	33	16	4	45	1.67
46180--46221	20	2.1	20	86	0	57	35	14	2	47	1.57
46158--46438	51	5.6	51	73	10	258	40	16	3	39	1.66
46086--46438	51	7.1	50	72	10	251	39	16	4	40	1.69
46257--46341	44	1.9	44	83	9	111	43	20	4	31	1.72
46158--46438	147	1.9	147	83	4	370	40	16	3	39	1.66

Tables:   1

The End!