genome.fa.s9163.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009163.1 Corchorus capsularis cultivar CVL-1 contig09184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50856

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2570--2603	13	2.6	13	95	0	59	23	8	8	58	1.56
7947--8080	65	2.1	65	95	0	241	26	5	22	44	1.75
9394--9426	2	16.5	2	100	0	66	51	0	0	48	1.00
15413--15453	16	2.6	16	88	0	55	51	31	9	7	1.62
15674--15760	44	2.0	44	90	4	140	34	4	5	55	1.44
16788--16869	38	2.2	36	80	8	101	60	10	14	13	1.58
16958--17032	31	2.4	31	86	4	96	44	5	18	32	1.72
17208--17305	29	3.2	29	65	25	74	33	9	2	55	1.43
17206--17311	34	3.2	35	69	24	111	33	8	1	55	1.41
17177--17339	64	2.5	64	86	8	183	33	7	4	55	1.47
18121--18185	4	17.0	4	84	9	64	0	66	0	33	0.92
18120--18184	12	5.7	12	82	10	73	0	64	0	35	0.94
18125--18168	6	7.2	6	86	2	52	0	61	0	38	0.96
18125--18180	18	3.1	18	86	2	76	0	64	0	35	0.94
32956--33038	24	3.5	24	67	18	73	21	7	18	53	1.68
32975--33014	18	2.2	18	86	0	53	20	7	17	55	1.66
32945--33049	48	2.2	48	89	0	174	26	5	17	50	1.68
34427--34481	10	5.1	11	73	18	53	7	20	43	29	1.78
34415--34481	33	2.0	33	94	0	116	8	23	40	26	1.84
35182--35218	19	2.0	18	89	5	56	40	8	21	29	1.82
48116--48175	31	1.9	31	96	0	111	28	13	8	50	1.70
48610--48671	31	2.0	31	90	0	97	32	17	8	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48099--49557	488	3.0	492	93	1	2457	35	12	5	46	1.65
49345--49439	47	2.0	46	86	9	131	31	9	0	58	1.30
50439--50474	19	1.9	18	88	5	54	41	2	22	33	1.68

Tables:   1

The End!