Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009166.1 Corchorus capsularis cultivar CVL-1 contig09187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35158

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--46
2
23.0
2
95
0
83
0
50
2
47
1.13
2167--2229
31
2.0
31
100
0
126
33
19
25
22
1.97
11898--12108
102
2.1
102
94
0
368
45
18
18
18
1.86
11923--12133
102
2.1
102
81
1
244
47
18
18
16
1.83
13753--13812
31
1.9
30
87
12
86
36
10
3
50
1.53
14225--14334
22
5.0
22
75
12
102
35
9
15
40
1.79
14224--14385
22
7.3
22
75
5
58
33
8
17
40
1.81
14450--14554
22
4.8
22
72
11
74
34
6
20
39
1.78
14463--14811
22
15.8
21
69
15
136
39
9
16
34
1.80
14935--15395
22
21.1
22
68
14
143
37
9
15
37
1.81
15080--15161
23
3.6
22
77
4
74
42
4
15
36
1.69
15257--15342
45
1.9
45
85
0
118
32
11
16
39
1.84
15368--15408
22
1.9
22
85
5
57
56
4
12
26
1.56
19717--19743
2
13.5
2
100
0
54
48
0
0
51
1.00
20767--20815
3
16.3
3
100
0
98
67
0
0
32
0.91
24202--24262
27
2.1
30
85
14
83
8
26
1
63
1.31
35042--35070
2
15.0
2
92
7
51
48
0
0
51
1.00

Tables:   1

The End!