Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009167.1 Corchorus capsularis cultivar CVL-1 contig09188, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.41


Found at i:1107 original size:20 final size:19

Alignment explanation


    Indices: 1082--1127  Score: 58
    Period size: 19  Copynumber: 2.4  Consensus size: 19

       1072 TTTCTTATTT

                                 
       1082 AATTAT-GATTACTAAAAAAC
          1 AATTATAGATTA-T-AAAAAC

                         *     
       1102 AATTATAGATTATCAAAAC
          1 AATTATAGATTATAAAAAC

                   
       1121 AATTATA
          1 AATTATA

       1128 AGGTTATTTA


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  19   12  0.50
  20    7  0.29
  21    5  0.21

ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33


Consensus pattern (19 bp):   
AATTATAGATTATAAAAAC

Done.