Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009168.1 Corchorus capsularis cultivar CVL-1 contig09189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33477

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
361--498
46
3.0
46
94
0
249
39
10
5
44
1.61
425--500
25
3.2
25
61
14
61
36
13
2
47
1.56
687--772
45
1.9
44
90
2
136
41
12
33
11
1.80
1824--1859
13
2.9
12
88
8
54
30
19
5
44
1.73
1831--1858
13
2.2
13
100
0
56
28
14
7
50
1.69
3215--3297
38
2.2
38
91
0
130
37
8
4
49
1.55
4516--4685
31
5.4
31
83
5
187
35
23
21
20
1.96
4515--4692
62
2.8
64
82
5
218
36
23
20
19
1.95
17650--17675
1
26.0
1
100
0
52
100
0
0
0
0.00
23094--23141
2
25.0
2
82
16
57
52
4
0
43
1.20
23916--23981
33
2.0
33
94
2
116
18
30
3
48
1.63
24012--24143
33
4.0
33
90
0
210
30
18
21
29
1.97
25032--25115
42
2.0
42
92
0
141
30
11
25
32
1.92

Tables:   1

The End!