Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009170.1 Corchorus capsularis cultivar CVL-1 contig09191, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66958

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9461--9487
7
3.9
7
100
0
54
0
29
0
70
0.88
11879--12001
49
2.5
49
82
6
142
25
12
34
27
1.91
13289--13330
19
2.3
18
84
8
57
35
2
0
61
1.09
13683--13744
31
2.0
31
100
0
124
35
12
19
32
1.90
16277--16384
31
3.5
31
85
0
126
37
13
17
31
1.89
18913--18952
20
2.0
20
85
0
53
20
0
20
60
1.37
21550--21586
1
37.0
1
100
0
74
0
0
0
100
0.00
27481--27529
23
2.1
23
88
0
71
81
4
12
2
0.91
27497--27529
12
2.9
11
91
8
57
87
3
9
0
0.63
27493--27529
12
3.1
12
92
0
56
86
2
10
0
0.67
32042--32097
28
2.0
28
100
0
112
42
7
14
35
1.73
32045--32123
28
2.8
28
86
3
88
45
11
10
32
1.74
36901--36962
29
2.1
29
93
0
106
29
11
19
40
1.86
36901--36973
29
2.5
29
84
8
103
26
12
17
43
1.84
38511--38572
25
2.4
25
91
2
97
16
19
8
56
1.64
38547--38580
17
2.0
17
100
0
68
17
17
5
58
1.57
39477--39578
31
3.3
30
86
8
141
9
13
36
40
1.78
39477--39578
16
6.5
16
86
3
145
9
13
36
40
1.78
39571--39628
23
2.5
23
85
0
71
3
18
48
29
1.65
39592--39631
6
6.8
6
85
5
55
0
22
50
27
1.50
40717--40748
16
2.0
16
93
0
55
3
18
53
25
1.59
40699--40771
22
3.3
23
84
9
98
1
17
49
31
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40744--40786
16
2.7
16
89
7
61
2
16
44
37
1.60
40705--40771
28
2.4
28
82
7
84
1
17
49
31
1.56
40699--40756
6
10.2
6
85
10
86
1
17
50
31
1.56
42733--42799
15
4.5
15
74
7
64
34
23
22
19
1.97
42733--42803
30
2.4
30
88
4
99
33
25
21
19
1.97
44822--44891
29
2.2
32
80
19
101
27
11
18
42
1.84
44835--44907
29
2.5
29
95
0
128
23
13
19
43
1.86
48410--48446
17
2.2
17
100
0
74
40
16
8
35
1.78
51077--51135
29
2.0
29
96
0
109
16
20
16
45
1.85
52403--52495
46
2.0
45
87
6
134
43
13
22
20
1.87
52682--52732
27
1.9
27
92
4
86
11
29
9
49
1.72
58034--58118
2
44.0
2
76
6
86
42
0
56
1
1.07
58034--58118
29
2.9
29
87
5
118
42
0
56
1
1.07

Tables:   1

The End!