Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009175.1 Corchorus capsularis cultivar CVL-1 contig09196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5020
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31


Found at i:2156 original size:27 final size:27

Alignment explanation


    Indices: 2126--2200  Score: 105
    Period size: 27  Copynumber: 2.8  Consensus size: 27

       2116 AAGTGAACTT

                          *        *   
       2126 AAAATGACCAAAATACCCCTAAATGCA
          1 AAAATGACCAAAATGCCCCTAAACGCA

                                *    **
       2153 AAAATGACCAAAATGCCCCTGAACGTG
          1 AAAATGACCAAAATGCCCCTAAACGCA

                                 
       2180 AAAATGACCAAAATGCCCCTA
          1 AAAATGACCAAAATGCCCCTA

       2201 TGTGACCCTA


Statistics
Matches: 42,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   42  1.00

ACGTcount: A:0.47, C:0.27, G:0.12, T:0.15


Consensus pattern (27 bp):   
AAAATGACCAAAATGCCCCTAAACGCA
Done.