Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009177.1 Corchorus capsularis cultivar CVL-1 contig09198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83604

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--229
26
8.7
25
84
10
273
27
15
24
33
1.95
161--223
31
2.0
31
88
11
94
25
14
22
38
1.92
1154--2629
321
4.6
320
85
4
1803
33
14
17
35
1.89
3421--3499
41
2.0
40
85
7
106
27
11
22
37
1.89
3411--3600
104
1.9
100
84
7
258
26
11
22
39
1.88
3677--3897
91
2.5
88
85
2
298
29
21
13
35
1.92
3943--3992
16
3.1
16
94
0
91
14
24
16
46
1.83
4570--4761
73
2.6
73
97
0
359
48
8
10
31
1.69
12493--12528
2
18.5
2
94
5
65
50
0
0
50
1.00
13209--13241
6
5.5
6
96
0
57
63
0
0
36
0.95
13297--13329
12
2.8
12
90
0
57
0
15
39
45
1.46
15422--15463
6
6.8
6
91
5
66
64
35
0
0
0.94
18511--18540
9
3.4
9
90
9
53
80
20
0
0
0.72
27972--27999
2
14.0
2
100
0
56
50
0
0
50
1.00
33789--34013
112
2.0
112
99
0
443
30
15
15
38
1.88
35088--35149
2
33.0
2
81
12
78
45
1
1
51
1.20
35093--35149
25
2.4
24
85
8
80
45
1
1
50
1.22
35331--35360
15
1.9
16
93
6
53
43
13
6
36
1.70
39335--39359
2
12.5
2
100
0
50
52
0
0
48
1.00
40633--40684
2
26.0
2
81
18
56
50
5
0
44
1.26
63950--64010
27
2.3
27
82
5
70
34
14
16
34
1.89
64353--64382
15
2.0
15
100
0
60
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64353--64386
8
4.4
8
88
7
52
50
0
0
50
1.00
75366--75397
7
4.7
7
92
7
57
87
0
12
0
0.54
75366--75397
13
2.4
13
94
5
55
87
0
12
0
0.54
80585--80609
2
12.5
2
100
0
50
48
0
0
52
1.00
80766--80797
4
8.0
4
92
0
55
21
0
3
75
0.95

Tables:   1

The End!