Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009178.1 Corchorus capsularis cultivar CVL-1 contig09199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2571
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40


Found at i:250 original size:26 final size:26

Alignment explanation


    Indices: 197--251  Score: 65
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        187 TGTTTTGATC

                        *  * *     *  
        197 ATTATTCTCACTTTTTTTAAAAGGAA
          1 ATTATTCTCACTATTATAAAAAGCAA

                                  *   
        223 ATTATTCTCACTATTATAAAAATCAA
          1 ATTATTCTCACTATTATAAAAAGCAA

               
        249 ATT
          1 ATT

        252 TGGATTAATC


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.40, C:0.13, G:0.04, T:0.44


Consensus pattern (26 bp):   
ATTATTCTCACTATTATAAAAAGCAA

Found at i:2378 original size:2 final size:2

Alignment explanation


    Indices: 2373--2397  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       2363 AAAGTGTCTT

                                                 
       2373 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       2398 TAATATTAGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.