Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009179.1 Corchorus capsularis cultivar CVL-1 contig09200, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52859

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2188--2227
18
2.2
19
86
4
55
52
0
7
40
1.30
20959--20995
16
2.3
16
90
0
56
51
16
16
16
1.77
21517--21789
21
12.6
21
69
6
96
18
4
56
20
1.57
21517--21588
24
3.1
24
80
5
78
11
6
58
23
1.56
21629--21792
42
3.8
42
83
2
184
20
1
57
20
1.50
21628--21789
87
1.9
84
84
3
216
20
1
57
20
1.50
21757--22071
153
2.1
153
93
0
540
19
9
42
28
1.82
21890--22427
198
2.7
194
79
10
563
20
10
40
28
1.85
22430--22524
45
2.1
45
80
3
102
20
7
49
23
1.73
34401--34432
12
2.7
12
90
0
55
53
9
12
25
1.68
37306--37395
45
2.0
45
100
0
180
40
22
11
26
1.87
40498--40522
11
2.3
11
100
0
50
20
0
0
80
0.72
43471--43516
22
2.1
22
95
0
83
36
4
2
56
1.31
43986--44022
12
3.2
12
77
14
51
62
13
13
10
1.55
45807--46131
96
3.4
96
89
0
479
23
20
24
32
1.98

Tables:   1

The End!