Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009193.1 Corchorus capsularis cultivar CVL-1 contig09214, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19617

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--59
16
2.6
16
96
0
75
52
4
28
14
1.62
7826--7858
16
2.1
16
100
0
66
24
21
18
36
1.95
13310--14714
48
29.2
48
71
11
512
23
16
21
38
1.93
13648--13865
47
4.6
47
73
8
129
22
17
20
38
1.93
14230--14403
89
1.9
90
80
5
201
22
16
22
38
1.93
15498--15573
31
2.5
31
84
0
107
39
14
14
31
1.86
15565--15647
25
3.3
25
75
18
82
34
20
16
27
1.94
15584--15685
26
4.0
26
76
11
104
34
22
14
28
1.94
15689--16429
26
28.2
26
84
4
862
34
23
14
27
1.93
16876--16965
44
2.0
44
97
0
171
43
13
14
28
1.83
16926--18673
322
5.4
320
85
2
2259
35
16
15
32
1.90
18393--19586
321
3.9
290
84
8
1146
35
16
15
32
1.91
18670--19586
321
2.9
321
90
2
1349
35
16
15
32
1.90

Tables:   1

The End!