Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009197.1 Corchorus capsularis cultivar CVL-1 contig09218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131399

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
806--890
31
2.8
31
96
1
154
15
18
29
36
1.92
1742--1776
17
2.1
17
88
0
52
54
8
2
34
1.46
11878--11909
3
10.7
3
93
0
55
62
0
3
34
1.11
23600--23640
21
2.0
21
85
9
57
14
46
2
36
1.58
24252--24276
2
12.5
2
100
0
50
52
0
48
0
1.00
25322--25349
6
4.7
6
100
0
56
71
0
14
14
1.15
50325--50350
1
26.0
1
100
0
52
100
0
0
0
0.00
54397--54445
22
2.4
21
90
10
75
18
16
28
36
1.92
54375--54477
53
1.9
52
86
7
145
16
18
28
36
1.92
57553--57597
22
2.0
22
83
8
56
68
6
2
22
1.24
57764--57918
70
2.2
70
84
8
192
34
11
1
51
1.49
65396--65507
31
3.9
30
76
21
107
15
19
28
36
1.92
65404--65504
53
1.9
53
89
0
157
15
19
27
36
1.93
82773--82841
3
23.0
3
83
0
66
40
34
23
1
1.64
97201--97335
33
4.1
33
81
0
153
14
32
28
24
1.95
97201--97335
66
2.0
66
85
0
180
14
32
28
24
1.95
98524--98558
2
17.5
2
87
0
52
45
5
0
48
1.26
99430--99533
49
2.1
50
87
7
149
21
11
15
51
1.74
104167--104284
60
2.0
58
84
12
152
24
12
22
39
1.89
124832--126109
323
4.0
324
84
3
1596
33
13
16
35
1.89
127120--131399
641
6.7
641
87
3
5782
32
13
17
36
1.89
127120--131399
323
13.3
323
87
3
5720
32
13
17
36
1.89

Tables:   1

The End!