Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009199.1 Corchorus capsularis cultivar CVL-1 contig09220, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11268
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:2391 original size:25 final size:25

Alignment explanation


    Indices: 2345--2401  Score: 78
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       2335 TAGTCTGTCG

                             *        
       2345 CTTTTCTCTTCGATTATGCTATCTTC
          1 CTTTT-TCTTCGATTATACTATCTTC

                     *    *          
       2371 CTTTTTCTTGGATTCTACTATCTTC
          1 CTTTTTCTTCGATTATACTATCTTC

                  
       2396 CTTTTT
          1 CTTTTT

       2402 TCTGCTCTTG


Statistics
Matches: 28,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  25   23  0.82
  26    5  0.18

ACGTcount: A:0.11, C:0.25, G:0.07, T:0.58


Consensus pattern (25 bp):   
CTTTTTCTTCGATTATACTATCTTC

Found at i:9448 original size:10 final size:10

Alignment explanation


    Indices: 9435--9462  Score: 56
    Period size: 10  Copynumber: 2.8  Consensus size: 10

       9425 TTTTTACATT

                      
       9435 CTCTGAAATC
          1 CTCTGAAATC

                      
       9445 CTCTGAAATC
          1 CTCTGAAATC

                    
       9455 CTCTGAAA
          1 CTCTGAAA

       9463 ACTTCAAACT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   18  1.00

ACGTcount: A:0.32, C:0.29, G:0.11, T:0.29


Consensus pattern (10 bp):   
CTCTGAAATC
Done.