Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009203.1 Corchorus capsularis cultivar CVL-1 contig09224, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77759

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
310--370
2
31.0
2
96
3
115
0
50
0
49
1.00
2052--2081
1
30.0
1
100
0
60
0
0
0
100
0.00
10036--10081
21
2.2
21
88
0
65
23
28
8
39
1.84
10304--10389
32
2.7
32
87
0
118
11
45
34
8
1.70
10304--10440
32
4.2
33
78
5
111
13
40
33
11
1.81
34347--34381
1
35.0
1
100
0
70
0
0
0
100
0.00
47596--47626
2
15.5
2
93
0
53
48
48
3
0
1.17
51390--51424
16
2.2
16
94
0
61
42
17
5
34
1.73
52193--52309
61
1.9
60
92
1
198
38
18
18
23
1.93
57878--57905
13
2.2
13
100
0
56
35
0
14
50
1.43
63317--63346
13
2.3
13
94
0
51
83
3
13
0
0.77
66630--66655
2
13.0
2
100
0
52
50
0
0
50
1.00
66797--66881
25
3.4
25
70
15
84
43
0
51
4
1.22
66810--66892
21
3.5
21
67
25
58
44
0
50
4
1.23
66793--66897
51
2.1
51
100
0
210
44
0
49
5
1.26
66817--66899
25
3.3
25
71
15
89
45
0
49
4
1.23
70615--70644
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!