Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009204.1 Corchorus capsularis cultivar CVL-1 contig09225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41138
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:12631 original size:21 final size:22
Alignment explanation
Indices: 12607--12649 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
12597 TTTGATGAAT
*
12607 TTCAAAAAC-AAATTCAGGAAA
1 TTCAAAAACAAAAATCAGGAAA
**
12628 TTCATTAACAAAAATCAGGAAA
1 TTCAAAAACAAAAATCAGGAAA
12650 AACATTAGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.56, C:0.14, G:0.09, T:0.21
Consensus pattern (22 bp):
TTCAAAAACAAAAATCAGGAAA
Found at i:19137 original size:2 final size:2
Alignment explanation
Indices: 19130--19173 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
19120 TACAAGCTTG
* *
19130 AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19172 AT
1 AT
19174 CTTTCAAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
AT
Found at i:22513 original size:335 final size:335
Alignment explanation
Indices: 21661--24267 Score: 3314
Period size: 335 Copynumber: 7.9 Consensus size: 335
21651 TAATGAATAC
* * * * * * *
21661 TACATGATTTTGGCTAAAATTTTACGAAAATTTATCCGAAAGATTTTTTTCTCAATTTTTGTCCA
1 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA
* * * * *
21726 CAATACTCATAAAAAATATATAATTCAGCACCAGAAAGATTGAAGGACATTTCACACTTCTAATA
66 CAATACTCATAAAAAATATATAAATCAACACCAGAAAGATTAAAGG-CTTTTCACGCTTCTAATA
* *
21791 ACGGTTTTTCTATATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTA
130 TCGATTTTTCTATATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTA
* * * * *
21856 AAATAAAATCCTTAAATCTGAAGTGGCTGAGATTTAGTTAGCAGAATATAGATATTTCAATGAGT
195 AAATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATATAGATATTTCAACGAGT
* *
21921 CTTGGCGCAAAAAATCATGCAAAACAGAG-CTGGAGCACCGGAACGCATTTTTTTAGCCAAAAAC
260 CTTGGCGCAAAAAATCATGCAAAACTGAGTC-GGAGCACCGGAACACATTTTTTTAGCCAAAAAC
21985 TGTGATGGTTAG
324 TGTGATGGTTAG
21997 TACACGATTTC-G----------GCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA
1 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA
* * * *
22051 CAATACTTATAAAAAATATATAAATCAACGCCAGAAAGATCAAAGGGTATTTCACGCTTCTAATA
66 CAATACTCATAAAAAATATATAAATCAACACCAGAAAGATTAAAGGCT-TTTCACGCTTCTAATA
* * * ** * *
22116 TTGATTTTCCCT-TATTTTACTAAATTAATTTCTGATTAAATCGAAACATGATTCTAATGCTCGT
130 TCGATTTT-TCTATATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGT
* *
22180 AAAATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATGTAGATATTTCAATGAG
194 AAAATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATATAGATATTTCAACGAG
* * * *
22245 TCTTGGCACAAAAAATCATGCAAAACTGAGACGGAGCACCAGAACACATTTTTTAAGCCAAAAAC
259 TCTTGGCGCAAAAAATCATGCAAAACTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAAAC
*
22310 TGTGATGGTTAA
324 TGTGATGGTTAG
* *
22322 TACATGATTTCGGCTAAAATTTTGTGAAAATTGACCC-AAGAGA-TTTTTCCTCAATTTTTGCCC
1 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAA-AGATTTTTTCCTCAATTTTTGCCC
* * * **
22385 ACAATACTTATAAGAAATATATAAATCAACTCCAGAAAGATTAAAGAGAATTTCACGCTTCTAAT
65 ACAATACTCATAAAAAATATATAAATCAACACCAGAAAGATTAAAG-GCTTTTCACGCTTCTAAT
* *
22450 ATTGATTTTCCCT-TATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCG
129 ATCGATTTT-TCTATATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCG
* * *
22514 TAAAATTAAATCCTTAAATCTAAAGTGGC-AATGATTTGCTTAGAAGAATATAGATATTTCAACG
193 TAAAATCAAATCCTTAAATCTAAAGTGGCTGA-GATTTGGTTAGAAGAATATAGATATTTCAACG
* * *
22578 AGTCTTGACGCAAAAAATCATG-AAAATTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAC
257 AGTCTTGGCGCAAAAAATCATGCAAAACTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAA
22642 ACTGTGATGGTTAG
322 ACTGTGATGGTTAG
* * * * * *
22656 TACACGATTTTGACGAAAATTTTGCGAAATTTGACCCGAAAGA-TTTTTCCTCAAATTTTACCCA
1 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA
* * * ** *
22720 AAATAGTCAT-AAAAATATATAATTCAGTACCAG-AAGATTGAATGGCTTTTCACGCTTCTAATA
66 CAATACTCATAAAAAATATATAAATCAACACCAGAAAGATT-AAAGGCTTTTCACGCTTCTAATA
* * * * *
22783 TCGATTTTTCTATATTTTTTCGAATTAATTTATGATTAAATCAAAATATGATTCTGATGCTCGTA
130 TCGATTTTTCTATATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTA
* * *
22848 AAATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGATTAGAAGAATATAGATATCTCAATGAGT
195 AAATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATATAGATATTTCAACGAGT
* * * * * * *
22913 CTTGGCGGAAAAAAATCATGCAAAACAGAGTCAGAACACC-GAA-ACGTTTTGTTTTAGTCAAAC
260 CTTGGC-GCAAAAAATCATGCAAAACTGAGTCGGAGCACCGGAACAC-ATTT-TTTTAGCCAAAA
*
22976 ACTGTAATGGTTAG
322 ACTGTGATGGTTAG
* **
22990 T--A-GA---CGGCTAATATTTTGCGAAAATTGACCCGAAAGATTTTTTCCAAAATTTCTT-CCC
1 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTT-TTGCCC
* * * * *
23048 ACAATACTCATAGAAAAATATATAATTCAGCACTAGAAAGATTGAATGGCTTTTCACGCATCTAA
65 ACAATACTCATA-AAAAATATATAAATCAACACCAGAAAGATT-AAAGGCTTTTCACGCTTCTAA
* *
23113 GATCTG-TTTTTCTATATTTCTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTC
128 TATC-GATTTTTCTATATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTC
* *
23177 GTAAAATCAAATCCTTAAATCTAAAGTGGCTGCGATTTGGTTATAAGAATATAGATATTTCAACG
192 GTAAAATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATATAGATATTTCAACG
* * *
23242 AGTCTTGGCGCAAAAAATCATGAAAAATTGAGCCGGAGCACCGGAACACATTTTTTTAGCCAAAA
257 AGTCTTGGCGCAAAAAATCATGCAAAACTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAA
23307 ACTGTGATGGTTAG
322 ACTGTGATGGTTAG
* * * * * *
23321 TAAACGATTTCTGCTAAAATTATGCGAAAATTGACCTGAAATATTTTTCCCTCAATTTTTGCCCA
1 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA
* *
23386 CAATACTCATAAAAAATATATAATTCAACA-CATGAAAGATTGAAAGGCTTTTCATGCTTCTAAT
66 CAATACTCATAAAAAATATATAAATCAACACCA-GAAAGATT-AAAGGCTTTTCACGCTTCTAAT
* *
23450 ATCGGTTTTTCTA-ATTTTTTCCGATTTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCG
129 ATCGATTTTTCTATA-TTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCG
* *
23514 TAAAATTAAATCCTTAAATCTAAAGTGGCT-ACGATTTGGTTAGAAGAATATAGATATTTAAACG
193 TAAAATCAAATCCTTAAATCTAAAGTGGCTGA-GATTTGGTTAGAAGAATATAGATATTTCAACG
* * *
23578 AGTCTTGGCGCAAAAAATCATG-AAAATTGAGTAGGAGCACCGGAATACATTTTTTTAGCCAAAA
257 AGTCTTGGCGCAAAAAATCATGCAAAACTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAA
23642 ACTGTGATGGTTAG
322 ACTGTGATGGTTAG
* * * * * *
23656 TACACCATTTCGACTCAAATTTTGTGAAAATTGACCCGAAAGATTTTTACCTCAATTATTGCCCA
1 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA
* * * * *
23721 CAATACTCATATAAAATATATAAATCAGCACCTGAAAGATTGAAGGGCTTTTCATGCTTCTAATA
66 CAATACTCATAAAAAATATATAAATCAACACCAGAAAGATT-AAAGGCTTTTCACGCTTCTAATA
* * * *
23786 TCGGTTTTTCTATATTTTTCCGAATTAATTTCTGATTAAATCGAAAAATGATTCTGATGCTTGTA
130 TCGATTTTTCTATATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTA
23851 AAATCAAATCCTTAAATCTAAAGTGGCTGAGA------T-------T-TAGATATTTCAACGAGT
195 AAATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATATAGATATTTCAACGAGT
* *
23902 CTTGGCGCAAAAAGTCATGAAAAACTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAAACT
260 CTTGGCGCAAAAAATCATGCAAAACTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAAACT
23967 GTGATGGTTAG
325 GTGATGGTTAG
* * *
23978 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACACGAAAGATTTTTTCCTCAATTATTACCCA
1 TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA
* * * * * **
24043 CAATACTCATAAATAATGTATAAATCAGCACCTGAAAGATTGAAGGGCTTTTCATACTTCTAATA
66 CAATACTCATAAAAAATATATAAATCAACACCAGAAAGATT-AAAGGCTTTTCACGCTTCTAATA
* * ** * *
24108 TCGTTTTTTCTATATTTTTTCCGAATTAATTTCTGATTAAATTAAAATAAGATTCTGATGCTCGT
130 TCGATTTTTCTATA-TTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGT
* * * *
24173 AAAATCAAATCCTCAAATCTAAAGTGACTCAGATTTGGTTAGAAGAATATAGATATTTCAATGAG
194 AAAATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATATAGATATTTCAACGAG
*
24238 TCTTGGCGCAAAAGATCATGCAAAACTGAG
259 TCTTGGCGCAAAAAATCATGCAAAACTGAG
24268 CTAGAGCACC
Statistics
Matches: 1998, Mismatches: 210, Indels: 125
0.86 0.09 0.05
Matches are distributed among these distances:
321 34 0.02
322 186 0.09
323 75 0.04
325 283 0.14
326 4 0.00
328 28 0.01
329 25 0.01
330 2 0.00
331 75 0.04
332 301 0.15
333 44 0.02
334 153 0.08
335 475 0.24
336 216 0.11
337 97 0.05
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (335 bp):
TACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA
CAATACTCATAAAAAATATATAAATCAACACCAGAAAGATTAAAGGCTTTTCACGCTTCTAATAT
CGATTTTTCTATATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTAA
AATCAAATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATATAGATATTTCAACGAGTC
TTGGCGCAAAAAATCATGCAAAACTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAAACTG
TGATGGTTAG
Found at i:23692 original size:1000 final size:991
Alignment explanation
Indices: 21676--24278 Score: 3513
Period size: 1000 Copynumber: 2.6 Consensus size: 991
21666 GATTTTGGCT
* * * * * *
21676 AAAATTTTACGAAAATTTATCCGAAAGATTTTTTTCTCAATTTTTGTCCACAATACTCATAAAAA
1 AAAATTTTGCGAAAATTGACCCGAAAGA-TTTTTCCTCAAATTTTGCCCACAATACTCAT-AAAA
* * *
21741 ATATATAATTCAGCACCAGAAAGATTGAAGGACATTTCACACTTCTAATAACGGTTTTTCTATAT
64 ATATATAATTCAGCACCAGAAAGATTGAAGG-CTTTTCACGCTTCTAATATCGGTTTTTCTATAT
* * *
21806 TTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTAAAATAAAATCCTTAA
128 TTTTCCGAATTAATTTCTGATTAAATC-AAAAATGATTCTGATGCTCGTAAAATCAAATCCTTAA
*
21871 ATCTGAAGTGGCTGAGATTTAGTTAGCAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAAT
192 ATCTAAAGTGGCTGAGATTTA-TTAG-AGAATATAGATA-TTCAATGAGTCTTGGCGCAAAAAAT
* *
21936 CATGCAAAACAGAG-CTGGAGCACCGGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTAC
254 CATGCAAAACAGAGTC-GGAGCACCGAAACG-ATTTTTTTAGCCAAAAACTGTGATGGTTAGTAG
** *
22000 AC-G---AT-TTCGGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTTA
317 ACGGCTAATATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTT-CCCACAATACTCA
* * * * *
22060 TAAAAAATATATAAATCAACGCCAGAAAGA-TCAAAGGGTATTTCACGCTTCTAATAT-TGATTT
381 TAAAAAATATATAAATCAGCACTAGAAAGATTGAAAGGCT-TTTCACGCTTCTAATATCTGATTT
* ** *
22123 TCCCT-TATTTTACTAAATTAATTTCTGATTAAATCGAAACATGATTCTAATGCTCGTAAAATCA
445 T-TCTATATTTT-CCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCA
* *
22187 AATCCTTAAATCTAAAGTGGCTGAGATTTGGTTAGAAGAATGTAGATATTTCAATGAGTCTTGGC
508 AATCCTTAAATCTAAAGTGGCTGCGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGC
* * *
22252 ACAAAAAATCATGCAAAACTGAGACGGAGCACCAGAACACATTTTTTAAGCCAAAAACTGTGATG
573 GCAAAAAATCATGCAAAACTGAGCCGGAGCACCGGAACACATTTTTTAAGCCAAAAACTGTGATG
* * * *
22317 GTTAATACATGATTTCGGCTAAAATTTTGTGAAAATTGACCCAAGAGATTTTTCCTCAATTTTTG
638 GTTAATAAACGATTTCGGCTAAAATTATGCGAAAATTGACCCAAGAGATTTTTCCTCAATTTTTG
* * *
22382 CCCACAATACTTATAAGAAATATATAAATCAACTCCAGAAAGATTAAAGAGAATTTCACGCTTCT
703 CCCACAATACTCATAAAAAATATATAAATCAACTACAGAAAGATTAAAGAGAATTTCACGCTTCT
* *
22447 AATATTGATTTTCCCTTATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCT
768 AATATCGATTTTCCCTAATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCT
* *
22512 CGTAAAATTAAATCCTTAAATCTAAAGTGGCAATGATTTGCTTAGAAGAATATAGATATTTCAAC
833 CGTAAAATTAAATCCTTAAATCTAAAGTGGCAACGATTTGCTTAGAAGAATATAGATATTTAAAC
* *
22577 GAGTCTTGACGCAAAAAATCATGAAAATTGAGTCGGAGCACCGGAACACATTTTTTTAGCCAAAC
898 GAGTCTTGACGCAAAAAATCATGAAAATTGAGTAGGAGCACCGGAACACATTTTTTTAGCCAAAA
* *
22642 ACTGTGATGGTTAGTACACGATTTTGACG
963 ACTGTGATGGTTAGTACACCATTTCGACG
* * * *
22671 AAAATTTTGCGAAATTTGACCCGAAAGATTTTTCCTCAAATTTTACCCAAAATAGTCATAAAAAT
1 AAAATTTTGCGAAAATTGACCCGAAAGATTTTTCCTCAAATTTTGCCCACAATACTCATAAAAAT
* *
22736 ATATAATTCAGTACCAG-AAGATTGAATGGCTTTTCACGCTTCTAATATCGATTTTTCTATATTT
66 ATATAATTCAGCACCAGAAAGATTGAA-GGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTT
* *
22800 TTTCGAATTAATTTATGATTAAATCAAAATATGATTCTGATGCTCGTAAAATCAAATCCTTAAAT
130 TTCCGAATTAATTTCTGATTAAATCAAAA-ATGATTCTGATGCTCGTAAAATCAAATCCTTAAAT
*
22865 CTAAAGTGGCTGAGATTTGATTAGAAGAATATAGATATCTCAATGAGTCTTGGCGGAAAAAAATC
194 CTAAAGTGGCTGAGATTT-ATTAG-AGAATATAGATAT-TCAATGAGTCTTGGC-GCAAAAAATC
* * * * * *
22930 ATGCAAAACAGAGTCAGAACACCGAAACGTTTTGTTTTAGTCAAACACTGTAATGGTTAGTAGAC
255 ATGCAAAACAGAGTCGGAGCACCGAAACGATTT-TTTTAGCCAAAAACTGTGATGGTTAGTAGAC
**
22995 GGCTAATATTTTGCGAAAATTGACCCGAAAGATTTTTTCCAAAATTTCTTCCCACAATACTCATA
319 GGCTAATATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTT-TTCCCACAATACTCATA
* * * *
23060 GAAAAATATATAATTCAGCACTAGAAAGATTGAATGGCTTTTCACGCATCTAAGATCTG-TTTTT
383 -AAAAATATATAAATCAGCACTAGAAAGATTGAAAGGCTTTTCACGCTTCTAATATCTGATTTTT
*
23124 CTATATTTCTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAAT
447 CTATATTT-TCCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAAT
* *
23189 CCTTAAATCTAAAGTGGCTGCGATTTGGTTATAAGAATATAGATATTTCAACGAGTCTTGGCGCA
511 CCTTAAATCTAAAGTGGCTGCGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCA
* * *
23254 AAAAATCATGAAAAATTGAGCCGGAGCACCGGAACACATTTTTTTAGCCAAAAACTGTGATGGTT
576 AAAAATCATGCAAAACTGAGCCGGAGCACCGGAACACATTTTTTAAGCCAAAAACTGTGATGGTT
* * * *
23319 AGTAAACGATTTCTGCTAAAATTATGCGAAAATTGACCTGAA-ATATTTTTCCCTCAATTTTTGC
641 AATAAACGATTTCGGCTAAAATTATGCGAAAATTGACC-CAAGAGATTTTT-CCTCAATTTTTGC
* ** *
23383 CCACAATACTCATAAAAAATATATAATTCAAC-ACATGAAAGATTGAAAG-GCTTTTCATGCTTC
704 CCACAATACTCATAAAAAATATATAAATCAACTACA-GAAAGATT-AAAGAGAATTTCACGCTTC
* * *
23446 TAATATCGGTTTT-TCTAATTTTTTCCGATTTAATTTCTAATTAAATCGAAACATGATTCTGATG
767 TAATATCGATTTTCCCTAA-TTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATG
* *
23510 CTCGTAAAATTAAATCCTTAAATCTAAAGTGGCTACGATTTGGTTAGAAGAATATAGATATTTAA
831 CTCGTAAAATTAAATCCTTAAATCTAAAGTGGCAACGATTTGCTTAGAAGAATATAGATATTTAA
* *
23575 ACGAGTCTTGGCGCAAAAAATCATGAAAATTGAGTAGGAGCACCGGAATACATTTTTTTAGCCAA
896 ACGAGTCTTGACGCAAAAAATCATGAAAATTGAGTAGGAGCACCGGAACACATTTTTTTAGCCAA
*
23640 AAACTGTGATGGTTAGTACACCATTTCGACT
961 AAACTGTGATGGTTAGTACACCATTTCGACG
* *
23671 CAAATTTTGTGAAAATTGACCCGAAAGATTTTTACCTC-AATTATTGCCCACAATACTCATATAA
1 AAAATTTTGCGAAAATTGACCCGAAAGATTTTT-CCTCAAATT-TTGCCCACAATACTCATA-AA
* * *
23735 AATATATAAATCAGCACCTGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTCTATA
63 AATATATAATTCAGCACCAGAAAGATTGAA-GGCTTTTCACGCTTCTAATATCGGTTTTTCTATA
*
23800 TTTTTCCGAATTAATTTCTGATTAAATCGAAAAATGATTCTGATGCTTGTAAAATCAAATCCTTA
127 TTTTTCCGAATTAATTTCTGATTAAATC-AAAAATGATTCTGATGCTCGTAAAATCAAATCCTTA
* *
23865 AATCTAAAGTGGCTGAGA--T-TT--AG---AT--AT-TTCAACGAGTCTTGGCGCAAAAAGTCA
191 AATCTAAAGTGGCTGAGATTTATTAGAGAATATAGATATTCAATGAGTCTTGGCGCAAAAAATCA
* *
23919 TGAAAAACTGAGTCGGAGCACCGGAACAC-ATTTTTTTAGCCAAAAACTGTGATGGTTAGTACAC
256 TGCAAAACAGAGTCGGAGCACC-GAA-ACGATTTTTTTAGCCAAAAACTGTGATGGTTAGT--A-
* * *
23983 GATTTCGGCTAAAATTTTGCGAAAATTGACACGAAAGATTTTTTCCTCAATTATTACCCACAATA
316 GA---CGGCTAATATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATT-TTTCCCACAATA
* * * **
24048 CTCATAAATAATGTATAAATCAGCACCT-GAAAGATTGAAGGGCTTTTCATACTTCTAATATC-G
377 CTCATAAAAAATATATAAATCAGCA-CTAGAAAGATTGAAAGGCTTTTCACGCTTCTAATATCTG
* ** * *
24111 TTTTTTCTATATTTTTTCCGAATTAATTTCTGATTAAATTAAAATAAGATTCTGATGCTCGTAAA
441 ATTTTTCTATA--TTTTCCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAA
* *
24176 ATCAAATCCTCAAATCTAAAGTGACT-CAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTC
504 ATCAAATCCTTAAATCTAAAGTGGCTGC-GATTTGGTTAGAAGAATATAGATATTTCAATGAGTC
* **
24240 TTGGCGCAAAAGATCATGCAAAACTGAGCTAGAGCACCG
568 TTGGCGCAAAAAATCATGCAAAACTGAGCCGGAGCACCG
24279 AGACGTACTG
Statistics
Matches: 1422, Mismatches: 144, Indels: 85
0.86 0.09 0.05
Matches are distributed among these distances:
988 51 0.04
989 20 0.01
990 4 0.00
991 8 0.01
992 148 0.10
993 143 0.10
994 224 0.16
995 28 0.02
996 2 0.00
997 2 0.00
998 51 0.04
999 267 0.19
1000 311 0.22
1001 24 0.02
1002 19 0.01
1003 116 0.08
1004 4 0.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (991 bp):
AAAATTTTGCGAAAATTGACCCGAAAGATTTTTCCTCAAATTTTGCCCACAATACTCATAAAAAT
ATATAATTCAGCACCAGAAAGATTGAAGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTT
TCCGAATTAATTTCTGATTAAATCAAAAATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCT
AAAGTGGCTGAGATTTATTAGAGAATATAGATATTCAATGAGTCTTGGCGCAAAAAATCATGCAA
AACAGAGTCGGAGCACCGAAACGATTTTTTTAGCCAAAAACTGTGATGGTTAGTAGACGGCTAAT
ATTTTGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTCCCACAATACTCATAAAAAATAT
ATAAATCAGCACTAGAAAGATTGAAAGGCTTTTCACGCTTCTAATATCTGATTTTTCTATATTTT
CCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCT
AAAGTGGCTGCGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATG
CAAAACTGAGCCGGAGCACCGGAACACATTTTTTAAGCCAAAAACTGTGATGGTTAATAAACGAT
TTCGGCTAAAATTATGCGAAAATTGACCCAAGAGATTTTTCCTCAATTTTTGCCCACAATACTCA
TAAAAAATATATAAATCAACTACAGAAAGATTAAAGAGAATTTCACGCTTCTAATATCGATTTTC
CCTAATTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTAAAATTAAAT
CCTTAAATCTAAAGTGGCAACGATTTGCTTAGAAGAATATAGATATTTAAACGAGTCTTGACGCA
AAAAATCATGAAAATTGAGTAGGAGCACCGGAACACATTTTTTTAGCCAAAAACTGTGATGGTTA
GTACACCATTTCGACG
Found at i:26190 original size:337 final size:335
Alignment explanation
Indices: 24938--27561 Score: 3401
Period size: 336 Copynumber: 7.8 Consensus size: 335
24928 ATTAGTAGAT
* ***
24938 GGCTAAAATTTTGCGAAAATTGACCCGAAAGATTGTTTCAAAAATTTCTT-CCCACAATACTCAT
1 GGCTAAAATTTTGCGAAAATTGACCCAAAAGATT-TTTCCTCAATTT-TTGCCCACAATACTCAT
* ** * * * *
25002 AGAAAAATATATAATTCAGCATTAGAAAGATTGAATGGCTTTTCACGCATCTAATATCTGTTTTT
64 A-AAAAATATATAATTCAGTACCAGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTT
* * * *
25067 CTATATTTTTCTGAATTAATTTCTGATAAAATCGAAACATGATTCTGATGCTCGTAAAATCAAAT
128 CTATATTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAAT
* * * *
25132 CCTTAAATCTAAAGTGGCTACGATTTAGTTAGAAGAATATAGATATTTCAACGAGTCTTGGCGCA
193 CCTTAAATCTAAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCA
* * * * *
25197 AAAAATCATGAAAAACTGAGTCGGAGCACTGGAA-GACATTTTTTTAGCCAAAAACTATGATGAT
258 AAAAATCATGCAAAACTGAGCCGGAGCACCGGAACG-CATTTTTTTAGCCAAAAACTGTGATGGT
25261 TAGTACACGATTTC
322 TAGTACACGATTTC
* * * * * *
25275 AGCTAAAATTTTGTGAAAATTGACCCGAAAGATTTTTACCTTAATTATTGCCCACAAAACTCATA
1 GGCTAAAATTTTGCGAAAATTGACCCAAAAGATTTTT-CCTCAATTTTTGCCCACAATACTCATA
* * * * *
25340 GAACATATATAAATCAGCACCTA-AAAGATTGAAGGGCTTTTCATGCTTCTAATATCAGTTTTTC
65 AAAAATATATAATTCAGTACC-AGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTC
* * * *
25404 TATATTTTTTTCGAATTAATTTTTGATTAAATTAAAACAAGATTCTGATGCTTGTAAAATCAAAT
129 TATA-TTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAAT
* *
25469 CCTTAAATCTAATGTGGCTAAGATTTGGTTAGAAGAACATAGATATTTCAATGAGTCTTGACGCA
193 CCTTAAATCTAAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGC-
* * *
25534 AAAAAATCATGCAAACCTGAGCCGGAGCACCAGAACGCATTTTTTTAGCCAAAAACTGTGATAGT
257 AAAAAATCATGCAAAACTGAGCCGGAGCACCGGAACGCATTTTTTTAGCCAAAAACTGTGATGGT
25599 TAGTACACGATTTC
322 TAGTACACGATTTC
* * * **
25613 GGCTAAAATTTTGCAAAAATTGACTCAAAAG-----------ATTTTTGCCCACAATACTGACCA
1 GGCTAAAATTTTGCGAAAATTGACCCAAAAGATTTTTCCTCAATTTTTGCCCACAATACTCATAA
* * *
25667 AAAATATGTAATTTAGTACCAGAAAGATTGGAGGGCTTTTC-TCGCTTCTAATATCGGTTTTTCT
66 AAAATATATAATTCAGTACCAGAAAGATTGAAGGGCTTTTCAT-GCTTCTAATATCGGTTTTTCT
* * * * * *
25731 AATTTTTTTCCGATTTAATTTCTAATTAAATCGAAACATGATTCTGATGCTCGTAAAATTAAATC
130 -ATATTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAATC
* * * *
25796 CTTAAATCTAAAGTGGCTACGAATTGGTTAGAAGAATATAGATATTTCAACGAGTCTTGGCGCAA
194 CTTAAATCTAAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAA
* *
25861 AAAATCATG-AAAATTGAGTCGGAGCACCGGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTA
259 AAAATCATGCAAAACTGAGCCGGAGCACCGGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTA
25925 GTACACGATTTC
324 GTACACGATTTC
* * * * *
25937 GGCTAAAATTTTGCAAAAATTGACTCAAAAGATTTTTGCCTCAATTTTTGCCCAGAATATTCACA
1 GGCTAAAATTTTGCGAAAATTGACCCAAAAGATTTTT-CCTCAATTTTTGCCCACAATACTCATA
*
26002 AAAAATATATAATTCAGTACCAGAAAGATTGGAGGGCTTTTCATGCTTCTAATATCGGTTTTTCT
65 AAAAATATATAATTCAGTACCAGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTCT
* * *
26067 ATATTTTTTTCCGATTTAGTTTCTGATTAAATTAAAACAAGATTCTGATGCTCGTAAAATCAAAT
130 ATA--TTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAAT
* * * *
26132 CCTTAAATCTACAGTGGCTAAGATTTAGTTAGAAGAGTATAGATATTTCAATGAGTCTTGACACA
193 CCTTAAATCTAAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCA
* * *
26197 AAAAATCATTCAAAACTGAGCCGGAGCACCAGAACGTATTTTTTTAGCCAAAAACTGTGATGGTT
258 AAAAATCATGCAAAACTGAGCCGGAGCACCGGAACGCATTTTTTTAGCCAAAAACTGTGATGGTT
* *
26262 AATATACGATTTC
323 AGTACACGATTTC
* * * ****
26275 GGCTAAAATTTTGCGAAATTTGACCCGAAATA-TTTTCCTCAATTACAACCCACAATACTCATAA
1 GGCTAAAATTTTGCGAAAATTGACCCAAAAGATTTTTCCTCAATTTTTGCCCACAATACTCATAA
* * ** * *
26339 ATAATATATAAATCAGCCCCTGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCAGTTTTTCTA
66 AAAATATATAATTCAGTACCAGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTCTA
*
26404 TATTTTTTTCCGAATTAATTTCTGATTAAATTAAAACAAGATTCTGATGCTCGTAAAATCAAATC
131 TA--TTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAATC
*
26469 CTTAAATCTACAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAA
194 CTTAAATCTAAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAA
* * *
26534 AAAATCATGCAAAACAGAGCCGGAGCA-CGATAACGCATTTTGTTAGCCAAAAACTGTGATGGTT
259 AAAATCATGCAAAACTGAGCCGGAGCACCG-GAACGCATTTTTTTAGCCAAAAACTGTGATGGTT
26598 AGTACACGATTTC
323 AGTACACGATTTC
* * * *
26611 GGCTAAAATTTTGCGAAATTTGACTCAAAAGATTTTTACTCAAATTTTGCCCACAATACTCATAA
1 GGCTAAAATTTTGCGAAAATTGACCCAAAAGATTTTTCCTCAATTTTTGCCCACAATACTCATAA
*
26676 AAAATATATAATTCAGTACCAGAAAGATTGAAGGGCTTTTC-TCGCTTCTAATATCAGTTTTTCT
66 AAAATATATAATTCAGTACCAGAAAGATTGAAGGGCTTTTCAT-GCTTCTAATATCGGTTTTTCT
* ** * *
26740 ATATTTTTCCGAATTAATTTCTGATTAAATCGAATTATGATTCTGATGCTCGTAAAATTAAATCC
130 ATATTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAATCC
* * *
26805 TTAAATCTAAAGTGGCTACGATTTGGTTAGAAGAATATAGATATTTCAACGAGTCTTGGCGCAAA
195 TTAAATCTAAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAA
* * *
26870 AAATCATG-AAAATTGAGTCGGAGCACCAGAACGCA-TTTTTTAGCCAAAAACTGTGATGGTTAG
260 AAATCATGCAAAACTGAGCCGGAGCACCGGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAG
*
26933 TATACGATTTC
325 TACACGATTTC
* * * *
26944 GGCTAAAATTTTGCGAAAATTGACTCAAAAGATTTTTGCCTCAATTTTTGCCCGCAATACTTACA
1 GGCTAAAATTTTGCGAAAATTGACCCAAAAGATTTTT-CCTCAATTTTTGCCCACAATACTCATA
* * *
27009 AAAAATATGTAATTCAGTACCAGAAAGATTGGAGGGTTTTTC-TCGCTTCTAATATCGGTTTTTC
65 AAAAATATATAATTCAGTACCAGAAAGATTGAAGGGCTTTTCAT-GCTTCTAATATCGGTTTTTC
* * * *
27073 CATATTTTTCTGAATTAATTTTTGATTAAATTAAAACAAGATTCTGATGCTCGTAAAATCAAATC
129 TATATTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAATC
*
27138 CTTAAATCTATAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGC-A
194 CTTAAATCTAAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAA
* * *
27202 AAAATCATGTAAAACAGAGCCGGAGCA-CGATAACGCATTTTTTTAGCCAAAAACTGTGATGGTT
259 AAAATCATGCAAAACTGAGCCGGAGCACCG-GAACGCATTTTTTTAGCCAAAAACTGTGATGGTT
* *
27266 AGTACATGATTTT
323 AGTACACGATTTC
* * * * * * * * * *
27279 GACGAAAATTTTGTGAAATTTGACCCGAAAGATTTTTCCCTAAAATTTTGCCAAAAATAGTCATA
1 GGCTAAAATTTTGCGAAAATTGACCCAAAAGATTTTT-CCTCAATTTTTGCCCACAATACTCATA
** * *
27344 AAAAATATATAATTCAGTA-CACGAAAGATTGAAGAACTTTTCACGCTTCTAATATCGATTTTTC
65 AAAAATATATAATTCAGTACCA-GAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTC
* * * * *
27408 TATA-TTTTCCGAATTAATTTCTGATTAAATCGAAATATGATTCTGATGCTCGTAAAGTCAAATT
129 TATATTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAATC
* * * * *
27472 CTTAAATCTAAAGTGGCTGAAGATTTGGTTAGAAGAATATAAATATCTCAATGTGTCTTGGCGCC
194 CTTAAATCTAAAGTGGCT-AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCA
* * * *
27537 AAAAATTATGTAAAACAGAGTCGGA
258 AAAAATCATGCAAAACTGAGCCGGA
27562 ACACTGATCG
Statistics
Matches: 2013, Mismatches: 237, Indels: 75
0.87 0.10 0.03
Matches are distributed among these distances:
324 93 0.05
325 13 0.01
326 179 0.09
327 2 0.00
333 84 0.04
334 308 0.15
335 312 0.15
336 465 0.23
337 373 0.19
338 183 0.09
339 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (335 bp):
GGCTAAAATTTTGCGAAAATTGACCCAAAAGATTTTTCCTCAATTTTTGCCCACAATACTCATAA
AAAATATATAATTCAGTACCAGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTCTA
TATTTTTCCGAATTAATTTCTGATTAAATCAAAACAAGATTCTGATGCTCGTAAAATCAAATCCT
TAAATCTAAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAA
AATCATGCAAAACTGAGCCGGAGCACCGGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGT
ACACGATTTC
Found at i:29185 original size:27 final size:26
Alignment explanation
Indices: 29155--29216 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
29145 GCTTTACTAA
29155 TTTTGCTTTAGA-TTTAGATTTAATTTG
1 TTTTGCTTTAGATTTTAG-TTTAA-TTG
*
29182 TTTTG-TTTTGATTTTTAGTTTAATTG
1 TTTTGCTTTAGA-TTTTAGTTTAATTG
29208 TTTT-CTTTA
1 TTTTGCTTTA
29217 TAATTGATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
26 15 0.50
27 10 0.33
28 5 0.17
ACGTcount: A:0.18, C:0.03, G:0.13, T:0.66
Consensus pattern (26 bp):
TTTTGCTTTAGATTTTAGTTTAATTG
Found at i:30312 original size:337 final size:336
Alignment explanation
Indices: 29396--34793 Score: 6939
Period size: 336 Copynumber: 16.1 Consensus size: 336
29386 CAAACACCGA
* * * * *
29396 AACGTATTGTTTTAGTCAAACACTGTGATGGTTAGT--A-GA---CGGCTAAAATTGTGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* ** * *
29455 TTGACCCAAAAGATTTTTTCCAAAATTTCTT-CCCACAATACTCATAGAAGAATATATAATTCAG
66 TTGACCCGAAAGATTTTTTCCTCAATTT-TTGCCCACAATACTCATA-AAAAATATATAAATCAG
* * * *
29519 CACTAGAAAGATTGAATGGCTTTTCACGCATCTAATATCTGTTTTTCTATATTTTTCCGAATTAA
129 CACCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAA
29584 TTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCT
194 TTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCT
** ** * * *
29649 GCGATTTGGTTAGAAGAATATAGATATTTCAACAAGTCTTGGCGCAAAAAATCATGAAAAATTGA
259 AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGA
*
29714 GCCGGAGCACCGG
324 GCCGGAGCACCAG
* * * *
29727 AACACATTTTTTTAGCCAAAAACTATGATGGTTAGTACATGATTTCGGCTAAAATTATGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* *
29792 TTGACCTGAAAGATTTTTTCCTCAATTTTTACCCACAATACTCAT-AAAAATATATAAATCAGCA
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * *
29856 CCTGAAAGATTTAAGGGCTTTTCATGCTTCTAATATCGGTTTTTCTATATTTTTTCCGAATTAAT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATA-TTTTTCCGAATTAAT
** * *
29921 TTCTGATTAAATTAAAACAAGATTCTGATGCTC-TAAAAATCAAATCCTTAAATCTACAGTGGCT
195 TTCTGATTAAATCGAAACATGATTCTGATGCTCGT-AAAATCAAATCCTTAAATCTAAAGTGGCT
* ** *
29985 AAGATTTGGTTAGAAGAGTATATTTATTTCAATGAGTCTTGACGCAAAAAATCATTCAAAACTGA
259 AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGA
30050 GCCGGAGCACCAG
324 GCCGGAGCACCAG
* * * * *
30063 AACGTA-TTTTTTAGCCAAAAACTGTGATGGTTAATACACGATTTCGGCAAAAATTTTGTGAAAT
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* *
30127 TTGACCCGAAAGATTTTTTCCTCAATTATTACCCACAATACTCATAAAAAATATATAAATCAGCA
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * *
30192 CCTAAAAAGATTGAAGGGTTTTTCATGCTTCTAATATCGGTTTTTCTATATTTTTTCCGAATTAA
131 CC-AGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATA-TTTTTCCGAATTAA
** * * *
30257 TTTCTGATTAAATTAAAACAAGATTCTGATGCTCTTAAAATCAAATCCTTAAATCTACAGTGGCT
194 TTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCT
*
30322 AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAACTCATGCAAAACTGA
259 AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGA
*
30387 GCCGGAGCATCAG
324 GCCGGAGCACCAG
* * *
30400 AACGCATTTTTTAAGGCAAAAACTGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGC-AAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * *** * * *
30464 TTTGACTCAAAAGATTTTTGGGTCAATTTTTGGCCACAATACTCACAAAAAATATGTAATAT-AG
66 -TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAA-ATCAG
* * * * *
30528 TACCAGAAAGATTGAAGGGCTTTTCTCACTTCTAATATCGGTTTTTCTAAATTTTTCCGATTTAA
129 CACCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAA
* *
30593 TTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATTAAATCTTTAAATCTAAAGTGGCT
194 TTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCT
* * * * *
30658 ACGATTTGGTTAGAAGAATATAGATATTTCAACGAGTCTTGGCGCAAAAAATCATGGAAAATTGA
259 AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGA
*
30723 GCCGGAGCACCGG
324 GCCGGAGCACCAG
*
30736 AACACATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * * * *
30801 TTGACACGAAATATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAACATATATAATTCAACA
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * * **
30866 CCTGAAAGATTGAAAGGTTTTTCGTGCTTCTAATATCGGTTTTTCTATATTTTTTCCGAATTAAT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATA-TTTTTCCGAATTAAT
* ** *
30931 TTCTTATTAAATTAAAACATGATTCTGATGCTCTTAAAATCAAATCCTTAAATCTACAA-TGGCT
195 TTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTA-AAGTGGCT
30995 AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAAATCATGCAAAACTG
259 AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGC-AAAAAATCATGCAAAACTG
* *
31060 AGTCGGAGCACTAG
323 AGCCGGAGCACCAG
* * *
31074 AACGCATTTTTTTAGCCAAGAACTGTGATGGTTTGTACACGATTTCGGCTAAAATTTTGCAAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * ** * * * * * *
31139 TTGACTCAAAAGATTTTTGGCTCAAATTTTGCCCACAATACTCACAAAGAATATGTAATTCAGTA
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * * * * **
31204 CCATAAAGATTGGAGGGCTTTTCTCGCTTCTAATATCGGTTTTTCTAAATTTTTCCGATTTGGTT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATT
* * *
31269 TCCT-ATTAAATCGAAACATGATTCTGATGCTCATAAAATTAAATCCTTAAATCTAAAGTGGTTA
196 T-CTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTA
* * * * *
31333 CGATTTGGTTAGAAGAATATAGATATTTAAACGAGTCTTGGCGCAAAAAATCATG-AAAATTGAG
260 AGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAG
* *
31397 TCGGAGCACCGG
325 CCGGAGCACCAG
** * * *
31409 AACAAATATTTTTATGCCAAAAACTGTGATGGTTAGTACACGATTTCGACTCAAATTTTGC-AAA
1 AACGCATTTTTTTA-GCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAA
* * * *
31473 ATTTGACCCGAAAGATTTTTTACTCAAAATTTTGCCCAAAATACTACATAAAAAAAATATATAAT
65 A-TTGACCCGAAAGATTTTTTCCTC-AATTTTTGCCCACAATACT-CAT--AAAAAATATATAAA
*
31538 TCAGTACCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAA
125 TCAGCACCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAA
* *
31603 TTAATTTCTGATTAAATCGAAACATGATTCTGATTCTCGTAAAATCAAATCATTAAATCTAAAGT
190 TTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGT
* * *
31668 GGCTAAGATTTGGTTAGAAGAATGTAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGAAAAA
255 GGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAA
* *
31733 CTGAGTCGGAGCACCAT
320 CTGAGCCGGAGCACCAG
*
31750 AACACA-TTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * *
31814 TTCACCCGAAAGATTTTTTCCTCAATTATTGCCCACAATAATCATAAAAAATATATAAATCAGCA
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * * *
31879 CCTGAAAGATTGAAGGGCTTTTCATGATTCTAATATCTGTTTTTCTATATTTTTTCCGAATTAAT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATA-TTTTTCCGAATTAAT
** * * *
31944 TTCTGATTAAATTAAAACAAGATTCTGATGCTCGTAAAATAAAATCCTTAAATCTACAGTGGCTA
195 TTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTA
* *
32009 AGAATT-GTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATG-ACAAACTGA
260 AGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCA-AAACTGA
*
32072 GCCGGTGCACCAG
324 GCCGGAGCACCAG
* * *
32085 AACACATTTTTTTAGCCAAAAA-T-TG-T-GATAATACACGATTTCGGCTAAAATTTTGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * * * * **
32146 TTGACCCGAAAGATTTTTTCCTCTATGTTTGCCCACAATACTCCTACAAAATATATAATTCATTA
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * * **
32211 ACAGAAAGATTGAAGGGCTTTTCACGCTTCTAGTATCGATTTCCCT-TATTTTTCCGAATTAATT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATT
* * * * *
32275 TTTGATTAAATCGAAACATGATTCTGATGCTCGTCAAATCAATTCCTTAAATCTAAAGAGGCTGA
196 TCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAA
* * * **
32340 GATTTGGTTAGACGAATATTGATATTTCAATGAGT-TTTAGCGCAAAAAAATCATGCAAAAGAGA
261 GATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGA-CGC-AAAAAATCATGCAAAACTGA
* * *
32404 GCCGAAGCACGAT
324 GCCGGAGCACCAG
* *
32417 AACGCATTTTTTTAGCAAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
*** *
32482 TTGATGTGAAAGTATTTTTTTTCCTCAATTATTGCCCACAATACTCAATAAAAAATATATAAATC
66 TTGACCCGAAAG-A--TTTTTTCCTCAATTTTTGCCCACAATACTC-ATAAAAAATATATAAATC
* * *
32547 AGCACCTGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTTTTTATATTTTTCCGAA
127 AGCACCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGG--TTTTTCTATATTTTTCCGAA
* *
32612 TTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAGTCTACAGT
190 TTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGT
* * * * *
32677 GGTTAAGATTTGGTTAGAAAAATATAGATAATTCAATGAGTCTTGATGCAGAAAATCATGCAAAA
255 GGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAA
* * *
32742 -TAAAGCCGGA-TACCAT
320 CT-GAGCCGGAGCACCAG
* * *
32758 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTACTACACAATTTCGGCTAAAATTTTGCGAAAT
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * * * * * *
32823 TTAACCCGAGAGATTTTTCCCTCAATTATTGCCCACAATACTTATAAAGAATATATAAACCAGCA
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * **
32888 CCTGAAAGATTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTCTATATTTTTTTTGAATTAAT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATA-TTTTTCCGAATTAAT
* ** * * * *
32953 TTCTGATTAGATTAAAACAAGATTCTGATGCTCGTAAAATCAAATCCTTAAATTTACAGTGGTTA
195 TTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTA
* * *
33018 AGATTTGGTTAGAAGAATATAGATAATTCAATGAGTCTTGACACAAAAAAAATCATGCAAAACAG
260 AGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGC--AAAAAATCATGCAAAACTG
*
33083 AGCCGGAGCACCAT
323 AGCCGGAGCACCAG
* * *
33097 AACGCATTTTTTTAGCCAAAAAATGTGA---TAACGTACACGATTTCAGCTAAAATTTTGCGAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTA-GTACACGATTTCGGCTAAAATTTTGCGAAA
* * * *
33159 TTTGACCCTAAAGATTTTTTCCTCAAATTTTGCCCAGC-ATACTCATAAAAAATATATAATTCAG
65 ATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA-CAATACTCATAAAAAATATATAAATCAG
* * * * *
33223 TACCAGAAAGATTGAATGGCTTTTCACGCTTATAATATCGGTTTTTCTATATTTTTCTGAATGAA
129 CACCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAA
*
33288 TTTATGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCT
194 TTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCT
* ** * * * * *
33353 GAGATTTTTTTAGAAGAATACAGATATTTCGATGAGTGTTGGCACAAAAAAATCATGCAAAACTG
259 AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGC-AAAAAATCATGCAAAACTG
*
33418 AGCTGGAGCACC-G
323 AGCCGGAGCACCAG
* * * * * *
33431 AAACACATTGTTTTAGCCAAATACTATGATGGTTAGT--AC-A--T-GGATAAATTTTTGCGAAA
1 -AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAA
* *
33490 ATTGACCTGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGC
65 ATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGC
* * * * * * * *
33555 ACTATAAATATTTAAGGGCTTTTCGCGTTTCTAATATCGGTTTTTCTA-AATTTACCGAATTAAT
130 ACCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAAT
* * *
33619 TTCTGATTAAATCGAAACATGATTTTGATGCTCGTAAAATCAAATCCTTAAATCTATAGTGGCTG
195 TTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTA
* * *
33684 ATATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCTTGCAAAACTGAG
260 AGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAG
* **
33749 TCGGAGCACTGG
325 CCGGAGCACCAG
* * *
33761 AACG-A-ATTTTTAGCCAAAAACTGTGAAGGTTAGTACACGATTTCGGCTAAAAATTTGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * * * * * *
33824 TTGACCCGAAAGAATATATCCTCAATTTTTCCCCACAATACTTATAAAAAATATAT-AATCAACG
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* ** * ** * ** * *
33888 CCATATTGATTGAAGTGCTTTTCACTATCCTAATATCAATTTTTCTATATTTTTCTGAGTTAATT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATT
* *
33953 TCTGTTTAAATCGAAACATGATTCTGACGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTGA
196 TCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCT-A
* * * * *
34018 A-ATTCGGTTAGAAGAATATAGATATTTCAATGAGTTTTGGCGCAAAAAATCATGCAAAATTCAG
260 AGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAG
*
34082 CCGGAGTACCAG
325 CCGGAGCACCAG
* * *
34094 AACGTATGTTTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * * * * *
34159 TTGACCTGAAAGATTTTTTGCTCAATTTTTGCCCATAATACTCATAAAAAATATATTATTCAACA
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * *
34224 CCAGAAAAATTGAACGGCTTTTCACGCTTCTAATATCGGTGTTTCTATATTTTTCCGAATTAATT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATT
* * *
34289 TCTGATTAAATTGAAACATGATAT-TGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGTCTG
196 TCTGATTAAATCGAAACATGAT-TCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTA
* *
34353 AGATTTGGTTAGAAGAATATAGATAATTCAATGAGTCTTGGCGCAAAAAAT-ATGCAAAACTGAG
260 AGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAG
** *
34417 TTGGAGCACCGG
325 CCGGAGCACCAG
* * ** *
34429 AACGCATTTTTTTTGCCAAAAACTGTGATGG-TA-TATACGATTTAAGTTAAAATTTTGCGAAAA
1 AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
* * * * * ***
34492 TTGACCCGAAAGATTTTTTTCTTAATTTTTGCCCATAATTCTTATAAAAAATATATAAATCAATG
66 TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
* * * *
34557 CCAGAAAGATTGAAGGGCATTTCACGCTTCTAATATCGATTTTCCTATATTTTTCCAAATTAATT
131 CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATT
* **
34622 TCTGATTAAATCGAAACATAATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTCC
196 TCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAA
* * * *
34687 GATTTGGTTAGAAGAATATAGATATTTCAACGAGTCTTGACGCAAAAAATCATGAAAAATTGAGT
261 GATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAGC
*
34752 CGGAGCACCGG
326 CGGAGCACCAG
*
34763 AACACATTTTTTTAGCCAAAAACTGTGATGG
1 AACGCATTTTTTTAGCCAAAAACTGTGATGG
34794 GCAGAGCGAA
Statistics
Matches: 4423, Mismatches: 565, Indels: 155
0.86 0.11 0.03
Matches are distributed among these distances:
327 24 0.01
328 1 0.00
329 32 0.01
330 189 0.04
331 175 0.04
332 213 0.05
333 455 0.10
334 63 0.01
335 536 0.12
336 1045 0.24
337 729 0.16
338 358 0.08
339 128 0.03
340 245 0.06
341 94 0.02
342 25 0.01
343 108 0.02
344 3 0.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (336 bp):
AACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA
TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAGCA
CCAGAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATT
TCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAA
GATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAGC
CGGAGCACCAG
Found at i:30876 original size:673 final size:672
Alignment explanation
Indices: 29405--34793 Score: 6938
Period size: 673 Copynumber: 8.0 Consensus size: 672
29395 AAACGTATTG
* * * *
29405 TTTTAGTCAAACACTGTGATGGTTAGT--A-GA---CGGCTAAAATTGTGCGAAAATTGACCCAA
1 TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
** *
29464 AAGATTTTTTCCAAAATTTCTT-CCCACAATACTCATAGAAGAATATATAATTCAGCA-CTAGAA
66 AAGATTTTTTCCTCAATTT-TTGCCCACAATACTCATA-AAAAATATATAATTCAGCACCT-GAA
* * *
29527 AGATTGAATGGCTTTTCACGCATCTAATATCTGTTTTTCTATATTTTTCCGAATTAATTTCTGAT
128 AGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATTTCTGAT
**
29592 TAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTGCGATTTG
193 TAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAAGATTTG
** * * *
29657 GTTAGAAGAATATAGATATTTCAACAAGTCTTGGCGCAAAAAATCATGAAAAATTGAGCCGGAGC
258 GTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAGCCGGAGC
* * * * *
29722 ACCGGAACACATTTTTTTAGCCAAAAACTATGATGGTTAGTACATGATTTCGGCTAAAATTATGC
323 ACCAGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGC
* *
29787 GAAAATTGACCTGAAAGATTTTTTCCTCAATTTTTACCCACAATACTCAT-AAAAATATATAAAT
388 GAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAAT
* * * *
29851 CAGCACCTGAAAGATTTAAGGGCTTTTCAT-GCTTCTAATATCGGTTTTTCTATATTTTTTCCGA
453 CAGTACCAGAAAGATTGAAGGGCTTTTC-TCGCTTCTAATATCGGTTTTTCTA-AATTTTTCCGA
** * *
29915 ATTAATTTCTGATTAAATTAAAACAAGATTCTGATGCTC-TAAAAATCAAATCCTTAAATCTACA
516 ATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGT-AAAATCAAATCCTTAAATCTAAA
* ** * *
29979 GTGGCTAAGATTTGGTTAGAAGAGTATATTTATTTCAATGAGTCTTGACGCAAAAAATCATTCAA
580 GTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGCAA
* **
30044 AACTGAGCCGGAGCACCAGAACGTA-TT
645 AATTGAGCCGGAGCACCAGAACACATTT
* * * *
30071 TTTTAGCCAAAAACTGTGATGGTTAATACACGATTTCGGCAAAAATTTTGTGAAATTTGACCCGA
1 TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
* * * *
30136 AAGATTTTTTCCTCAATTATTACCCACAATACTCATAAAAAATATATAAATCAGCACCTAAAAAG
66 AAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGCACCT-GAAAG
* *
30201 ATTGAAGGGTTTTTCATGCTTCTAATATCGGTTTTTCTATATTTTTTCCGAATTAATTTCTGATT
130 ATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATA-TTTTTCCGAATTAATTTCTGATT
** * * *
30266 AAATTAAAACAAGATTCTGATGCTCTTAAAATCAAATCCTTAAATCTACAGTGGCTAAGATTTGG
194 AAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAAGATTTGG
*
30331 TTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAACTCATGCAAAACTGAGCCGGAGCA
259 TTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAGCCGGAGCA
* * * *
30396 TCAGAACGCATTTTTTAAGGCAAAAACTGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGC-
324 CCAGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCG
* * *** * * *
30460 AAAATTTGACTCAAAAGATTTTTGGGTCAATTTTTGGCCACAATACTCACAAAAAATATGTAATA
389 AAAA-TTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAA-A
* *
30525 T-AGTACCAGAAAGATTGAAGGGCTTTTCTCACTTCTAATATCGGTTTTTCTAAATTTTTCCGAT
452 TCAGTACCAGAAAGATTGAAGGGCTTTTCTCGCTTCTAATATCGGTTTTTCTAAATTTTTCCGAA
* *
30589 TTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATTAAATCTTTAAATCTAAAGT
517 TTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGT
* * *
30654 GGCTACGATTTGGTTAGAAGAATATAGATATTTCAACGAGTCTTGGCGCAAAAAATCATGGAAAA
582 GGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGCAAAA
*
30719 TTGAGCCGGAGCACCGGAACACATTT
647 TTGAGCCGGAGCACCAGAACACATTT
*
30745 TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACACGA
1 TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
* * *
30810 AATATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAACATATATAATTCAACACCTGAAAGA
66 AAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGCACCTGAAAGA
* * ** *
30875 TTGAAAGGTTTTTCGTGCTTCTAATATCGGTTTTTCTATATTTTTTCCGAATTAATTTCTTATTA
131 TTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATA-TTTTTCCGAATTAATTTCTGATTA
** *
30940 AATTAAAACATGATTCTGATGCTCTTAAAATCAAATCCTTAAATCTACAA-TGGCTAAGATTTGG
195 AATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTA-AAGTGGCTAAGATTTGG
*
31004 TTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAAATCATGCAAAACTGAGTCGGAGC
259 TTAGAAGAATATAGATATTTCAATGAGTCTTGACGC-AAAAAATCATGCAAAACTGAGCCGGAGC
* * *
31069 ACTAGAACGCATTTTTTTAGCCAAGAACTGTGATGGTTTGTACACGATTTCGGCTAAAATTTTGC
323 ACCAGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGC
* * * ** * * * * *
31134 AAAAATTGACTCAAAAGATTTTTGGCTCAAATTTTGCCCACAATACTCACAAAGAATATGTAATT
388 GAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAAT
* * *
31199 CAGTACCATAAAGATTGGAGGGCTTTTCTCGCTTCTAATATCGGTTTTTCTAAATTTTTCCGATT
453 CAGTACCAGAAAGATTGAAGGGCTTTTCTCGCTTCTAATATCGGTTTTTCTAAATTTTTCCGAAT
** * *
31264 TGGTTTCCT-ATTAAATCGAAACATGATTCTGATGCTCATAAAATTAAATCCTTAAATCTAAAGT
518 TAATTT-CTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGT
* * * *
31328 GGTTACGATTTGGTTAGAAGAATATAGATATTTAAACGAGTCTTGGCGCAAAAAATCATG-AAAA
582 GGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGCAAAA
* * * *
31392 TTGAGTCGGAGCACCGGAACAAATAT
647 TTGAGCCGGAGCACCAGAACACATTT
* *
31418 TTTTATGCCAAAAACTGTGATGGTTAGTACACGATTTCGACTCAAATTTTGC-AAAATTTGACCC
1 TTTTA-GCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAA-TTGACCC
* * * * *
31482 GAAAGATTTTTTACTCAAAATTTTGCCCAAAATACTACATAAAAAAAATATATAATTCAGTACCA
64 GAAAGATTTTTTCCTC-AATTTTTGCCCACAATACT-CAT--AAAAAATATATAATTCAGCACCT
31547 GAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATTTCT
125 GAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATTTCT
* *
31612 GATTAAATCGAAACATGATTCTGATTCTCGTAAAATCAAATCATTAAATCTAAAGTGGCTAAGAT
190 GATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAAGAT
* * * *
31677 TTGGTTAGAAGAATGTAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGAAAAACTGAGTCGG
255 TTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAGCCGG
* *
31742 AGCACCATAACACA-TTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTT
320 AGCACCAGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTT
* * *
31806 TGCGAAAATTCACCCGAAAGATTTTTTCCTCAATTATTGCCCACAATAATCATAAAAAATATATA
385 TGCGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATA
* * * * *
31871 AATCAGCACCTGAAAGATTGAAGGGCTTTTCAT-GATTCTAATATCTGTTTTTCTATATTTTTTC
450 AATCAGTACCAGAAAGATTGAAGGGCTTTTC-TCGCTTCTAATATCGGTTTTTCTA-AATTTTTC
** * *
31935 CGAATTAATTTCTGATTAAATTAAAACAAGATTCTGATGCTCGTAAAATAAAATCCTTAAATCTA
513 CGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTA
* *
32000 CAGTGGCTAAGAATT-GTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATG-
578 AAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGC
* *
32063 ACAAACTGAGCCGGTGCACCAGAACACATTT
643 A-AAATTGAGCCGGAGCACCAGAACACATTT
* *
32094 TTTTAGCCAAAAA-T-TG-T-GATAATACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
1 TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
* * * * ** * *
32155 AAGATTTTTTCCTCTATGTTTGCCCACAATACTCCTACAAAATATATAATTCATTAACAGAAAGA
66 AAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGCACCTGAAAGA
* * ** *
32220 TTGAAGGGCTTTTCACGCTTCTAGTATCGATTTCCCT-TATTTTTCCGAATTAATTTTTGATTAA
131 TTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATTTCTGATTAA
* * * *
32284 ATCGAAACATGATTCTGATGCTCGTCAAATCAATTCCTTAAATCTAAAGAGGCTGAGATTTGGTT
196 ATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAAGATTTGGTT
* * * ** *
32349 AGACGAATATTGATATTTCAATGAGT-TTTAGCGCAAAAAAATCATGCAAAAGAGAGCCGAAGCA
261 AGAAGAATATAGATATTTCAATGAGTCTTGA-CGC-AAAAAATCATGCAAAACTGAGCCGGAGCA
* * * *
32413 CGATAACGCATTTTTTTAGCAAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAATTTTGCG
324 CCAGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCG
*** *
32478 AAAATTGATGTGAAAGTATTTTTTTTCCTCAATTATTGCCCACAATACTCAATAAAAAATATATA
389 AAAATTGACCCGAAAG-A--TTTTTTCCTCAATTTTTGCCCACAATACTC-ATAAAAAATATATA
* * * *
32543 AATCAGCACCTGAAAGATTGAAGGGCTTTTCAT-GCTTCTAATATCGGTTTTTTTTTATATTTTT
450 AATCAGTACCAGAAAGATTGAAGGGCTTTTC-TCGCTTCTAATATCGG--TTTTTCTAAATTTTT
*
32607 CCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAGTCT
512 CCGAATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCT
* * * * ** *
32672 ACAGTGGTTAAGATTTGGTTAGAAAAATATAGATAATTCAATGAGTCTTGATGCAGAAAATCATG
577 AAAGTGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATG
** * * *
32737 CAAAATAAAGCCGGA-TACCATAACGCATTT
642 CAAAATTGAGCCGGAGCACCAGAACACATTT
* * * *
32767 TTTTAGCCAAAAACTGTGATGGTTACTACACAATTTCGGCTAAAATTTTGCGAAATTTAACCCGA
1 TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
* * * * * **
32832 GAGATTTTTCCCTCAATTATTGCCCACAATACTTATAAAGAATATATAAACCAGCACCTGAAAGA
66 AAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGCACCTGAAAGA
* **
32897 TTGAAGGGCTTTTCATGCTTCTAATATCGGTTTTTCTATATTTTTTTTGAATTAATTTCTGATTA
131 TTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATA-TTTTTCCGAATTAATTTCTGATTA
* ** * * * *
32962 GATTAAAACAAGATTCTGATGCTCGTAAAATCAAATCCTTAAATTTACAGTGGTTAAGATTTGGT
195 AATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAAGATTTGGT
* * *
33027 TAGAAGAATATAGATAATTCAATGAGTCTTGACACAAAAAAAATCATGCAAAACAGAGCCGGAGC
260 TAGAAGAATATAGATATTTCAATGAGTCTTGACGC--AAAAAATCATGCAAAACTGAGCCGGAGC
* * * *
33092 ACCATAACGCATTTTTTTAGCCAAAAAATGTGA---TAACGTACACGATTTCAGCTAAAATTTTG
323 ACCAGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTA-GTACACGATTTCGGCTAAAATTTTG
* * *
33154 CGAAATTTGACCCTAAAGATTTTTTCCTCAAATTTTGCCCAGC-ATACTCATAAAAAATATATAA
387 CGAAAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCA-CAATACTCATAAAAAATATATAA
* * * * * *
33218 TTCAGTACCAGAAAGATTGAATGGCTTTTCACGCTTATAATATCGGTTTTTCTATATTTTTCTGA
451 ATCAGTACCAGAAAGATTGAAGGGCTTTTCTCGCTTCTAATATCGGTTTTTCTAAATTTTTCCGA
* *
33283 ATGAATTTATGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAG
516 ATTAATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAG
* ** * * * *
33348 TGGCTGAGATTTTTTTAGAAGAATACAGATATTTCGATGAGTGTTGGCACAAAAAAATCATGCAA
581 TGGCTAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGC-AAAAAATCATGCAA
* * *
33413 AACTGAGCTGGAGCACC-GAAACACATTG
645 AATTGAGCCGGAGCACCAG-AACACATTT
* * * * *
33441 TTTTAGCCAAATACTATGATGGTTAGT--AC-A--T-GGATAAATTTTTGCGAAAATTGACCTGA
1 TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
* *
33500 AAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGCA-CTATAAAT
66 AAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGCACCT-GAAAG
* * * * *
33564 ATTTAAGGGCTTTTCGCGTTTCTAATATCGGTTTTTCTA-AATTTACCGAATTAATTTCTGATTA
130 ATTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATTTCTGATTA
* * * *
33628 AATCGAAACATGATTTTGATGCTCGTAAAATCAAATCCTTAAATCTATAGTGGCTGATATTTGGT
195 AATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAAGATTTGGT
* * *
33693 TAGATGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCTTGCAAAACTGAGTCGGAGCAC
260 TAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAGCCGGAGCAC
** * * *
33758 TGGAACG-A-ATTTTTAGCCAAAAACTGTGAAGGTTAGTACACGATTTCGGCTAAAAATTTGCGA
325 CAGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGA
* * * * *
33821 AAATTGACCCGAAAGAATATATCCTCAATTTTTCCCCACAATACTTATAAAAAATATAT-AATCA
390 AAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCA
*** * ** * * ** * ** * * *
33885 ACGCCATATTGATTGAAGTGCTTTTCACTATCCTAATATCAATTTTTCTATATTTTTCTGAGTTA
455 GTACCAGAAAGATTGAAGGGCTTTTCTCGCTTCTAATATCGGTTTTTCTAAATTTTTCCGAATTA
* *
33950 ATTTCTGTTTAAATCGAAACATGATTCTGACGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGC
520 ATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGC
* *
34015 TGAA-ATTCGGTTAGAAGAATATAGATATTTCAATGAGTTTTGGCGCAAAAAATCATGCAAAATT
585 T-AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGCAAAATT
* * ** *
34079 CAGCCGGAGTACCAGAACGTATGT
649 GAGCCGGAGCACCAGAACACATTT
* *
34103 TTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCTGA
1 TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
* * * * * *
34168 AAGATTTTTTGCTCAATTTTTGCCCATAATACTCATAAAAAATATATTATTCAACACCAGAAAAA
66 AAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGCACCTGAAAGA
* *
34233 TTGAACGGCTTTTCACGCTTCTAATATCGGTGTTTCTATATTTTTCCGAATTAATTTCTGATTAA
131 TTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATTTCTGATTAA
* * *
34298 ATTGAAACATGATAT-TGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGTCTGAGATTTGGT
196 ATCGAAACATGAT-TCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAAGATTTGGT
* * **
34362 TAGAAGAATATAGATAATTCAATGAGTCTTGGCGCAAAAAAT-ATGCAAAACTGAGTTGGAGCAC
260 TAGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAGCCGGAGCAC
* * * ** *
34426 CGGAACGCATTTTTTTTGCCAAAAACTGTGATGG-TA-TATACGATTTAAGTTAAAATTTTGCGA
325 CAGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGA
* * * * *
34489 AAATTGACCCGAAAGATTTTTTTCTTAATTTTTGCCCATAATTCTTATAAAAAATATATAAATCA
390 AAATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCA
* * * * * * * *
34554 ATGCCAGAAAGATTGAAGGGCATTTCACGCTTCTAATATCGATTTTCCTATATTTTTCCAAATTA
455 GTACCAGAAAGATTGAAGGGCTTTTCTCGCTTCTAATATCGGTTTTTCTAAATTTTTCCGAATTA
*
34619 ATTTCTGATTAAATCGAAACATAATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGC
520 ATTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGC
** * * *
34684 TCCGATTTGGTTAGAAGAATATAGATATTTCAACGAGTCTTGACGCAAAAAATCATGAAAAATTG
585 TAAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGCAAAATTG
* *
34749 AGTCGGAGCACCGGAACACATTT
650 AGCCGGAGCACCAGAACACATTT
34772 TTTTAGCCAAAAACTGTGATGG
1 TTTTAGCCAAAAACTGTGATGG
34794 GCAGAGCGAA
Statistics
Matches: 4130, Mismatches: 516, Indels: 151
0.86 0.11 0.03
Matches are distributed among these distances:
662 75 0.02
663 154 0.04
664 109 0.03
665 5 0.00
666 242 0.06
667 95 0.02
668 389 0.09
669 343 0.08
670 37 0.01
671 97 0.02
672 284 0.07
673 702 0.17
674 700 0.17
675 258 0.06
676 143 0.03
677 237 0.06
678 100 0.02
679 101 0.02
680 59 0.01
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (672 bp):
TTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGACCCGA
AAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAATTCAGCACCTGAAAGA
TTGAAGGGCTTTTCACGCTTCTAATATCGGTTTTTCTATATTTTTCCGAATTAATTTCTGATTAA
ATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCTAAGATTTGGTT
AGAAGAATATAGATATTTCAATGAGTCTTGACGCAAAAAATCATGCAAAACTGAGCCGGAGCACC
AGAACGCATTTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAA
AATTGACCCGAAAGATTTTTTCCTCAATTTTTGCCCACAATACTCATAAAAAATATATAAATCAG
TACCAGAAAGATTGAAGGGCTTTTCTCGCTTCTAATATCGGTTTTTCTAAATTTTTCCGAATTAA
TTTCTGATTAAATCGAAACATGATTCTGATGCTCGTAAAATCAAATCCTTAAATCTAAAGTGGCT
AAGATTTGGTTAGAAGAATATAGATATTTCAATGAGTCTTGGCGCAAAAAATCATGCAAAATTGA
GCCGGAGCACCAGAACACATTT
Found at i:39179 original size:33 final size:33
Alignment explanation
Indices: 39134--39197 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
39124 ATCAGGGTCA
39134 AACGTTGCAAAATCGGCTCAATCAAGGGTCTCT
1 AACGTTGCAAAATCGGCTCAATCAAGGGTCTCT
* *
39167 AACGTTGTAAAATTGGCTCAATCAAGGGTCT
1 AACGTTGCAAAATCGGCTCAATCAAGGGTCT
39198 GCCGTCAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (33 bp):
AACGTTGCAAAATCGGCTCAATCAAGGGTCTCT
Done.