Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009206.1 Corchorus capsularis cultivar CVL-1 contig09227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78568

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7513--7541
6
4.8
6
100
0
58
0
0
13
86
0.58
7608--7645
3
12.7
3
100
0
76
34
0
0
65
0.93
11610--11638
2
14.5
2
100
0
58
48
0
0
51
1.00
13157--13185
6
4.8
6
100
0
58
0
0
17
82
0.66
17997--18167
93
1.8
93
100
0
342
33
19
15
30
1.93
34886--34930
3
13.7
3
90
9
54
0
31
0
68
0.89
56100--56147
24
2.0
24
88
8
71
25
27
16
31
1.97
59978--60008
14
2.2
14
100
0
62
25
12
16
45
1.83
64989--65018
13
2.2
14
94
5
53
80
0
20
0
0.72
68416--68480
31
2.2
31
86
5
89
33
26
24
15
1.95
69295--69364
28
2.5
28
88
4
97
40
1
2
55
1.23
69295--69369
29
2.6
29
87
6
109
40
2
4
53
1.34
69372--69469
33
2.8
33
87
6
133
12
30
37
19
1.88
71884--74270
331
7.2
331
82
4
2765
33
15
15
35
1.90
76186--76821
344
1.9
342
84
3
832
36
17
14
30
1.90
75795--77726
633
3.0
628
86
7
2609
35
17
14
32
1.90
75795--77726
310
6.0
322
76
12
1864
35
17
14
32
1.90
77862--77896
11
3.2
11
91
0
52
28
5
0
65
1.15
77798--78509
323
2.2
321
87
3
993
36
16
14
33
1.88

Tables:   1

The End!