Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009207.1 Corchorus capsularis cultivar CVL-1 contig09228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2744
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Found at i:745 original size:222 final size:220
Alignment explanation
Indices: 350--797 Score: 568
Period size: 222 Copynumber: 2.0 Consensus size: 220
340 CTGAGATTTG
*
350 GTTTGATTAATATAGATATTTAAAGAAGCCTTTCTACCAAAAATCATGTAAAACTGAGCTGGAGC
1 GTTTGATGAATATAGATATTTAAAGAAGCCTTTCTACCAAAAATCATGTAAAACTGAGCTGGA-C
* * * * * * *
415 CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCAGCTATAACTAACTCG
65 CCAGAAACCCGTTTTTAGCAAAAAACCGTGATCGTTAGTACACGATTTCAGCTAAAACTAACCCG
* *
480 AAGAGTTTTTCTCAATTTTTCCAGAAAATTTTTAGCAAAAATATAAAATTCGACAT-CA-AAATG
130 AAGAGTTTTTCTCAATTTTTCCAGAAAATATTCAGCAAAAATATAAAATTC-A-ATCCATAAA-G
543 AATT-AAGGGATTTT-CACGCTTCTAATATC
192 -ATTGAAGGG-TTTTACACGCTTCTAATATC
* * *
572 GTTTGATGAATATAGATATTTAAAGGAGCCTTTCTGCCAAAAATCATGTAAAACTGTG-TCGGA-
1 GTTTGATGAATATAGATATTTAAAGAAGCCTTTCTACCAAAAATCATGTAAAACTGAGCT-GGAC
* *
635 TCAGAAACCCGTTTTTAGCAAAAAACCGTGATCGTTAGTACACGATTTCAGCTAAAAACTGACCC
65 CCAGAAACCCGTTTTTAGCAAAAAACCGTGATCGTTAGTACACGATTTCAGCT-AAAACTAACCC
* ** *
700 GAAGAGTTTTTTTCTCGATTTTTCTGGAAAATATTCAGC-AAAATATATAATTCAATGCCATAAA
129 GAAGAG--TTTTTCTCAATTTTTCCAGAAAATATTCAGCAAAAATATAAAATTCAAT-CCATAAA
*
764 GATTGATGGGTTTTACACGCTTCTAATATC
191 GATTGAAGGGTTTTACACGCTTCTAATATC
794 GTTT
1 GTTT
798 TTTTTTTCAT
Statistics
Matches: 197, Mismatches: 20, Indels: 18
0.84 0.09 0.08
Matches are distributed among these distances:
220 49 0.25
221 23 0.12
222 96 0.49
223 29 0.15
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33
Consensus pattern (220 bp):
GTTTGATGAATATAGATATTTAAAGAAGCCTTTCTACCAAAAATCATGTAAAACTGAGCTGGACC
CAGAAACCCGTTTTTAGCAAAAAACCGTGATCGTTAGTACACGATTTCAGCTAAAACTAACCCGA
AGAGTTTTTCTCAATTTTTCCAGAAAATATTCAGCAAAAATATAAAATTCAATCCATAAAGATTG
AAGGGTTTTACACGCTTCTAATATC
Found at i:1393 original size:321 final size:320
Alignment explanation
Indices: 572--2090 Score: 1903
Period size: 322 Copynumber: 4.7 Consensus size: 320
562 TTCTAATATC
* * * *
572 GTTTGATGAATATAGATATTT-AAAGGAGCCTTTCTGCCAAAAATCATGTAAAACTGTGTCGGA-
1 GTTTGATGAATATAGATATTTCAAA-GAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGAG
* * * * *
635 -TCAGAAACCCGTTTTTAGCAAAAAACCGTGATCGTTAGTACACGATTTCAGCTAAAAACTGACC
65 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTGACC
* * * * *
699 CGAAGAGTTTTTTTCTCGATTTTTCTGGAAAATATTCAG-CAAAATATATAATTCAATGCCATAA
130 CGAAGAG--TTTTTCTCAATTTTTCTGGAAAATATTCAGAAAAAATATATAATTCAACGTCAAAA
*
763 AGATTGATGGGTTTTACACGCTTCTAATATCGTTTTTTTTTTCATTTCTCTTTTTCGAATTTATT
193 AGATTGATGGGTTTTTCACGCTTCTAATATCG----TTTTTTCA--T-T-TTTTTCGAATTTATT
*
828 TCAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATGCTTAAATCCATTGTGACTGA
250 TCAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGA
893 GATTTG
315 GATTTG
* * *
899 GTTTGATGAATATCGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGTAAAACTGAGCCGGAGC
1 GTTTGATGAATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGAGC
* * *
964 CCCGAAACGCGTTTTTAGCCAAAAACCGTTATGGCTAGTACACAATTTCAGCTAAAAACTGACCC
66 CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTGACCC
* *
1029 GAAGAGTTTTTCTCAATTTTTCTGGAAAATATTCAGAAAAAAATTTATAATTCAACGCCAAAAAG
131 GAAGAGTTTTTCTCAATTTTTCTGGAAAATATTCAG-AAAAAATATATAATTCAACGTCAAAAAG
* *
1094 ATTGATGGGTTTTTCACGCTTCTAATATCGTTTTTTCATATTTTTGGAATTTATTTCAAATTAAA
195 ATTGATGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTCGAATTTATTTCAAATTAAA
* *
1159 TCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTCAGATTTA
260 TCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGAGATTTG
* * *
1220 GTTAGATGAATATAGATATTTCAAAGAGGTCATTT-TGCCAAAAATCATGCAAAACAGAGCCAGA
1 GTTTGATGAATATAGATATTTCAAAGA-GTC-TTTCTGCCAAAAATCATGCAAAACTGAGCCGGA
* * * * * *
1284 GCCCCGAAACGCGTTTCTATCCAAAAACTGTGATGGTTAGTATATGATTTTAGCTAAAAACTGAC
64 GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTGAC
* * * *
1349 CCAAAGAGTTTTTCTCCATTTTTCTGGAAAATATTCAGAAAAAATATATAATTTAATGTCATAAA
129 CCGAAGAGTTTTTCTCAATTTTTCTGGAAAATATTCAGAAAAAATATATAATTCAACGTCA-AAA
* *
1414 A-ATTGATGGGTTTTTCACGCTTTTAATATCGTTATTTCATTTTTTTTCGAATTTATTTCAAATT
193 AGATTGATGGGTTTTTCACGCTTCTAATATCGTTTTTTCA-TTTTTTTCGAATTTATTTCAAATT
1478 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGAGATTTG
257 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGAGATTTG
* * *
1542 GTTTGATGAATATAGATATTT-AAAGAAGCCTTTCTGCCAAAACTCATGTAAAACTGAGCCGGAG
1 GTTTGATGAATATAGATATTTCAAAG-AGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGAG
*
1606 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTAACC
65 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTGACC
** * * * * *
1671 CGAAGAGTTTTTCTCAATTTTTCCAGAAAATTTTCAGAAAAAATATAAAATTCGACATCAAAATG
130 CGAAGAGTTTTTCTCAATTTTTCTGGAAAATATTCAGAAAAAATATATAATTCAACGTCAAAAAG
* * * * * * *
1736 AATT-AAGGGATTTTCACGCTTCTAATATTGTTTTTTCCATTCTTTTCAGAAATAATTTCTAATT
195 -ATTGATGGGTTTTTCACGCTTCTAATATCGTTTTTT-CATTTTTTTC-GAATTTATTTCAAATT
* * * * * *
1800 AAATCGAAAGAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCTGA-TGTGATTGAGATTTT
257 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATC-CATTGTGACTGAGATTTG
* * * * * * *
1864 GTTCGATGAATATAGATATTTCAAGGAGTCTATGC-GCCAAAAATCATGCAAAATTTAGCTGGGG
1 GTTTGATGAATATAGATATTTCAAAGAGTCT-TTCTGCCAAAAATCATGCAAAACTGAGCCGGAG
* * * * * ** *
1928 CTCCGGAACGGGTTTGTAG-GACAAAACCGTGATGGTTTTTAAACGATTTCAGCTAAAAACTGAC
65 CCCCGAAACGCGTTTTTAGCCA-AAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTGAC
* * * * * *
1992 CCGAAGAGTTTTCCAT-AATTTTTATGGAAAATTTTCAGAAAAAATATAAAATTCGACATCAAAA
129 CCGAAGAGTTTTTC-TCAATTTTTCTGGAAAATATTCAGAAAAAATATATAATTCAACGTCAAAA
* * *
2056 TGAATT-AGGGGATTTTCACGCTTCTAATATCGTTT
193 AG-ATTGATGGGTTTTTCACGCTTCTAATATCGTTT
2091 GATGAATATA
Statistics
Matches: 1057, Mismatches: 115, Indels: 45
0.87 0.09 0.04
Matches are distributed among these distances:
320 6 0.01
321 336 0.32
322 495 0.47
323 11 0.01
325 8 0.01
327 84 0.08
328 2 0.00
329 115 0.11
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (320 bp):
GTTTGATGAATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGAGC
CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTGACCC
GAAGAGTTTTTCTCAATTTTTCTGGAAAATATTCAGAAAAAATATATAATTCAACGTCAAAAAGA
TTGATGGGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTCGAATTTATTTCAAATTAAAT
CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGAGATTTG
Found at i:1498 original size:643 final size:646
Alignment explanation
Indices: 655--2090 Score: 1934
Period size: 643 Copynumber: 2.2 Consensus size: 646
645 GTTTTTAGCA
* * *
655 AAAAACCGTGATCGTTAGTACACGATTTCAGCTAAAAACTGACCCGAAGAGTTTTTTTCTCGATT
1 AAAAACCGTGATGGTTAGTAAACGATTTCAGCTAAAAACTGACCCGAAGAG--TTTTTCTCAATT
* *
720 TTTCTGGAAAATATTCAG-CAAAATATATAATTCAATGCCATAAAGATTGATGGGTTTTACACGC
64 TTTCTGGAAAATATTCAGAAAAAATATATAATTCAATGCCATAAAAATTGATGGGTTTTACACGC
*
784 TTCTAATATCGTTTTTTTTTTCATTTCTCTTTTTCGAATTTATTTCAAATTAAATCGAAACAAGA
129 TTCTAATATCG---TTTATTTCATTTCTCTTTTTCGAATTTATTTCAAATTAAATCGAAACAAGA
* *
849 TTCAGATGCTCGTAAAAACAAATGCTTAAATCCATTGTGACTGAGATTTGGTTTGATGAATATCG
191 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGAGATTTGGTTTGATGAATATAG
* * *
914 ATATTTCAAGGAGTCTTTCTGCCAAAAATCATGTAAAACTGAGCCGGAGCCCCGAAACGCGTTTT
256 ATATTTAAAGAAGCCTTTCTGCCAAAAATCATGTAAAACTGAGCCGGAGCCCCGAAACGCGTTTT
* *
979 TAGCCAAAAACCGTTATGGCTAGTACACAATTTCAGCTAAAAACTGACCCGAAGAGTTTTTCTCA
321 TAGCCAAAAACCGTGATGGCTAGTACACAATTTCAGCTAAAAACTAACCCGAAGAGTTTTTCTCA
** * * * * *
1044 ATTTTTCTGGAAAATATTCAGAAAAAAATTTATAATTCAACGCCAAAAAG-ATTGATGGGTTTTT
386 ATTTTTCCAGAAAATATTCAG-AAAAAATATAAAATTCAACACCAAAAAGAATT-AAGGGATTTT
* * *
1108 CACGCTTCTAATATCGTTTTTT-CATAT-TTTT-GGAATTTATTTCAAATTAAATCGAAACAAGA
449 CACGCTTCTAATATCGTTTTTTCCAT-TCTTTTCAGAAATAATTTCAAATTAAATCGAAACAAGA
1170 TTCAGATGCTCGTAAAAACAAATCCTTAAATC-CATTGTGACTCAGATTTAGTTAGATGAATATA
513 TTCAGATGCTCGTAAAAACAAATCCTTAAATCTCA-TGTGACTCAGATTTAGTTAGATGAATATA
**
1234 GATATTTCAAAGAGGTC-ATTTTGCCAAAAATCATGCAAAACAGAGCCAGAGCCCCGAAACGCGT
577 GATATTTCAAAGA-GTCTA-TGCGCCAAAAATCATGCAAAACAGAGCCAGAGCCCCGAAACGCGT
1298 TTCTATCC
640 TTCTA-CC
* * * * * *
1306 AAAAACTGTGATGGTTAGTATATGATTTTAGCTAAAAACTGACCCAAAGAGTTTTTCTCCATTTT
1 AAAAACCGTGATGGTTAGTAAACGATTTCAGCTAAAAACTGACCCGAAGAGTTTTTCTCAATTTT
* * *
1371 TCTGGAAAATATTCAGAAAAAATATATAATTTAATGTCATAAAAATTGATGGGTTTTTCACGCTT
66 TCTGGAAAATATTCAGAAAAAATATATAATTCAATGCCATAAAAATTGATGGGTTTTACACGCTT
*
1436 TTAATATCG-TTATTTCA-TT-T-TTTTTCGAATTTATTTCAAATTAAATCGAAACAAGATTCAG
131 CTAATATCGTTTATTTCATTTCTCTTTTTCGAATTTATTTCAAATTAAATCGAAACAAGATTCAG
1497 ATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGAGATTTGGTTTGATGAATATAGATATT
196 ATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGAGATTTGGTTTGATGAATATAGATATT
*
1562 TAAAGAAGCCTTTCTGCCAAAACTCATGTAAAACTGAGCCGGAGCCCCGAAACGCGTTTTTAGCC
261 TAAAGAAGCCTTTCTGCCAAAAATCATGTAAAACTGAGCCGGAGCCCCGAAACGCGTTTTTAGCC
* *
1627 AAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTAACCCGAAGAGTTTTTCTCAATTTT
326 AAAAACCGTGATGGCTAGTACACAATTTCAGCTAAAAACTAACCCGAAGAGTTTTTCTCAATTTT
* * * *
1692 TCCAGAAAATTTTCAGAAAAAATATAAAATTCGACATCAAAATGAATTAAGGGATTTTCACGCTT
391 TCCAGAAAATATTCAGAAAAAATATAAAATTCAACACCAAAAAGAATTAAGGGATTTTCACGCTT
* * * *
1757 CTAATATTGTTTTTTCCATTCTTTTCAGAAATAATTTCTAATTAAATCGAAAGAAGATTTAGATG
456 CTAATATCGTTTTTTCCATTCTTTTCAGAAATAATTTCAAATTAAATCGAAACAAGATTCAGATG
* * * * * *
1822 CTCGTAAAAACAAATCCTTATATCTGATGTGATTGAGATTTTGTTCGATGAATATAGATATTTCA
521 CTCGTAAAAACAAATCCTTAAATCTCATGTGACTCAGATTTAGTTAGATGAATATAGATATTTCA
* *** ** * * * * * **
1887 AGGAGTCTATGCGCCAAAAATCATGCAAAATTTAGCTGGGGCTCCGGAACGGGTTTGTAGG
586 AAGAGTCTATGCGCCAAAAATCATGCAAAACAGAGCCAGAGCCCCGAAACGCGTTTCTACC
** *
1948 ACAAAACCGTGATGGTTTTTAAACGATTTCAGCTAAAAACTGACCCGAAGAGTTTTCCAT-AATT
1 A-AAAACCGTGATGGTTAGTAAACGATTTCAGCTAAAAACTGACCCGAAGAGTTTTTC-TCAATT
* * * *
2012 TTTATGGAAAATTTTCAGAAAAAATATAAAATTCGACAT--CA-AAATGAATT-AGGGGATTTT-
64 TTTCTGGAAAATATTCAGAAAAAATATATAATTC-A-ATGCCATAAA--AATTGATGGG-TTTTA
2072 CACGCTTCTAATATCGTTT
124 CACGCTTCTAATATCGTTT
2091 GATGAATATA
Statistics
Matches: 692, Mismatches: 78, Indels: 37
0.86 0.10 0.05
Matches are distributed among these distances:
642 56 0.08
643 392 0.57
644 107 0.15
645 5 0.01
646 7 0.01
649 29 0.04
650 51 0.07
651 45 0.07
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (646 bp):
AAAAACCGTGATGGTTAGTAAACGATTTCAGCTAAAAACTGACCCGAAGAGTTTTTCTCAATTTT
TCTGGAAAATATTCAGAAAAAATATATAATTCAATGCCATAAAAATTGATGGGTTTTACACGCTT
CTAATATCGTTTATTTCATTTCTCTTTTTCGAATTTATTTCAAATTAAATCGAAACAAGATTCAG
ATGCTCGTAAAAACAAATCCTTAAATCCATTGTGACTGAGATTTGGTTTGATGAATATAGATATT
TAAAGAAGCCTTTCTGCCAAAAATCATGTAAAACTGAGCCGGAGCCCCGAAACGCGTTTTTAGCC
AAAAACCGTGATGGCTAGTACACAATTTCAGCTAAAAACTAACCCGAAGAGTTTTTCTCAATTTT
TCCAGAAAATATTCAGAAAAAATATAAAATTCAACACCAAAAAGAATTAAGGGATTTTCACGCTT
CTAATATCGTTTTTTCCATTCTTTTCAGAAATAATTTCAAATTAAATCGAAACAAGATTCAGATG
CTCGTAAAAACAAATCCTTAAATCTCATGTGACTCAGATTTAGTTAGATGAATATAGATATTTCA
AAGAGTCTATGCGCCAAAAATCATGCAAAACAGAGCCAGAGCCCCGAAACGCGTTTCTACC
Found at i:2601 original size:543 final size:545
Alignment explanation
Indices: 1542--2633 Score: 1528
Period size: 543 Copynumber: 2.0 Consensus size: 545
1532 CTGAGATTTG
* *
1542 GTTTGATGAATATAGATATTTAAAGAAGCCTTTCTGCCAAAACTCATGTAAAACTGAGCCGGAGC
1 GTTTGATGAATATAAATATTTAAAGAAGCCTTTCTGCCAAAAATCATGTAAAACTGAGCCGGAGC
1607 CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTAACCC
66 CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTAACCC
*
1672 GAAGAGTTTTTCTCAATTTTTCCAGAAAATTTTCAGAAAAAATATAAAATTCGACATCAAAATGA
131 GAAGAGTTTTTCTCAATTTTTCCAGAAAATATTCAGAAAAAATATAAAATTCGACATCAAAATGA
* *
1737 ATTAAGGGATTTTCACGCTTCTAATATTGTTTTTTCCATTCTTTTCAGAAATAATTTCTAATTAA
196 ATTAAGGGATTTTCACGCTTCTAATATCGTTTTTTCCATTCTTTTCAGAAATAATTTCAAATTAA
* * * * * * * *
1802 ATCGAAAGAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCTGATGTGATTGAGATTTTGTT
261 ATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTAAAATCTCATGTGACTCAGATTTAGTT
* *** ** *
1867 CGATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATGCAAAATTTAGCTGGGGCTCC
326 AGATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATGCAAAACAGAGCCAGGGCCCC
* * * ** *
1932 GGAACGGGTTTGTAGGACAAAACCGTGATGGTTTTTAAACGATTTCAGCTAAAAACTGACCCGAA
391 GAAACGCGTTTGTAGCACAAAACCGTGATGGTTAGTAAACGATTTCAGCTAAAAACTAACCCGAA
* *
1997 GAGTTTTCCATAATTTTTATGGAAAATTTTCAGAAAAAATATAAAATTCGACATCAAAATGAATT
456 GAGTTTTCCATAATTTTTACGGAAAAATTTCAGAAAAAATATAAAATTCGACATCAAAATGAATT
*
2062 AGGGGATTTTCACGCTTCTAATATC
521 AAGGGATTTTCACGCTTCTAATATC
* * * *
2087 GTTTGATGAATATAAATATTTCAAGGAGCCTTTCTGCCAAAAATCATGTAAAACTGTGTCGGAGC
1 GTTTGATGAATATAAATATTTAAAGAAGCCTTTCTGCCAAAAATCATGTAAAACTGAGCCGGAGC
* *
2152 GCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTGACCC
66 CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTAACCC
** *
2217 GAAGAGTTTTTCTCAATTTTTCTGGAAAATATTCAG-AAAAATATTATAATTC-A-ATGCCATAA
131 GAAGAGTTTTTCTCAATTTTTCCAGAAAATATTCAGAAAAAATA-TAAAATTCGACAT--CA-AA
* * * *
2279 A-G-ATTGATGGG-TTTTACACGCTTCTAATATCGTTTTTT-CATTTTTTTC-GAATTTATTTCA
192 ATGAATT-AAGGGATTTT-CACGCTTCTAATATCGTTTTTTCCATTCTTTTCAGAAATAATTTCA
2339 AATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTAAAATC-CATTGTGACTCAGA
255 AATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTAAAATCTCA-TGTGACTCAGA
** *
2403 TTTAGTTAGATGAATATAGATATTTCAA-GAGGTC-ATTTTGCCAAAAATCATGCCAAACAGAGC
319 TTTAGTTAGATGAATATAGATATTTCAAGGA-GTCTA-TGCGCCAAAAATCATGCAAAACAGAGC
* * *
2466 CAGGGCCCCGAAACGCGTTTTTAGC-CAAAAACCGTGATGGTTAGTACACGATTTCAGTTAAAAA
382 CAGGGCCCCGAAACGCGTTTGTAGCAC-AAAACCGTGATGGTTAGTAAACGATTTCAGCTAAAAA
*
2530 CTAACCCGAAGAGTTTTTC-TCAATTTTT-CGAGAAAAATTTCAGAAAAAATATAAAATTCGACA
446 CTAACCCGAAGAGTTTTCCAT-AATTTTTACG-GAAAAATTTCAGAAAAAATATAAAATTCGACA
*
2593 TCAAAATGAATTAAGGGATTTTCACGCTTCTAATATT
509 TCAAAATGAATTAAGGGATTTTCACGCTTCTAATATC
2630 GTTT
1 GTTT
2634 TTTTCCATTC
Statistics
Matches: 485, Mismatches: 50, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
542 7 0.01
543 261 0.54
544 24 0.05
545 190 0.39
546 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (545 bp):
GTTTGATGAATATAAATATTTAAAGAAGCCTTTCTGCCAAAAATCATGTAAAACTGAGCCGGAGC
CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAACTAACCC
GAAGAGTTTTTCTCAATTTTTCCAGAAAATATTCAGAAAAAATATAAAATTCGACATCAAAATGA
ATTAAGGGATTTTCACGCTTCTAATATCGTTTTTTCCATTCTTTTCAGAAATAATTTCAAATTAA
ATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTAAAATCTCATGTGACTCAGATTTAGTT
AGATGAATATAGATATTTCAAGGAGTCTATGCGCCAAAAATCATGCAAAACAGAGCCAGGGCCCC
GAAACGCGTTTGTAGCACAAAACCGTGATGGTTAGTAAACGATTTCAGCTAAAAACTAACCCGAA
GAGTTTTCCATAATTTTTACGGAAAAATTTCAGAAAAAATATAAAATTCGACATCAAAATGAATT
AAGGGATTTTCACGCTTCTAATATC
Done.