genome.fa.s9209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009209.1 Corchorus capsularis cultivar CVL-1 contig09230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65703

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2759	331	8.3	330	83	3	3126	32	15	16	35	1.90
3711--6130	334	7.3	332	83	5	2638	32	15	16	35	1.90
12260--12298	20	1.9	20	89	5	60	58	7	2	30	1.39
12310--12456	74	2.0	74	94	2	260	40	10	28	20	1.86
12716--12833	33	3.6	33	83	4	123	11	34	42	11	1.77
24232--24275	22	1.9	22	86	9	61	25	18	29	27	1.98
24417--24483	22	3.0	22	91	0	107	13	20	41	23	1.88
24985--25029	15	2.8	17	73	13	58	15	26	15	42	1.87
27896--27960	27	2.4	27	87	7	87	7	24	7	60	1.51
31256--31304	3	14.7	3	80	19	53	69	0	30	0	0.89
31257--31304	7	7.0	7	97	2	89	70	0	29	0	0.87
33653--33693	14	2.8	15	81	7	57	80	0	12	7	0.90
36192--36218	13	2.1	13	100	0	54	51	7	7	33	1.58
42634--42687	26	2.1	26	83	13	67	57	5	18	18	1.59
44126--44648	261	2.0	261	99	0	1037	46	8	5	40	1.57
44761--44985	70	3.1	70	84	9	297	49	0	12	37	1.45
44755--44993	78	3.2	77	88	7	341	50	0	12	36	1.46
45131--45157	1	27.0	1	100	0	54	0	0	0	100	0.00
53109--53149	19	2.2	19	90	0	64	12	21	24	41	1.87
53113--53211	47	2.1	47	88	0	144	15	25	31	28	1.95
53263--53312	25	1.9	25	84	8	64	6	24	40	30	1.79
53355--53701	26	12.8	26	75	15	228	22	23	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53366--53745	81	4.6	79	83	11	401	22	23	27	26	1.99
53381--53668	27	10.7	27	78	14	267	23	22	28	25	1.99
53872--54203	29	11.3	29	74	8	233	19	19	26	34	1.95
53920--54189	148	1.8	148	84	6	368	18	19	25	36	1.94
53872--54244	206	1.8	206	86	2	543	17	20	24	36	1.95
54610--54647	20	1.9	20	94	0	67	10	13	36	39	1.79
54584--54695	48	2.3	48	93	0	197	16	14	28	41	1.87
54719--54968	58	4.3	58	86	3	306	17	20	33	28	1.95

Tables:   1

The End!