Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009216.1 Corchorus capsularis cultivar CVL-1 contig09237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129507

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
176--315
22
6.3
22
71
9
104
33
8
20
37
1.83
508--587
23
3.5
23
86
1
108
37
8
15
38
1.78
507--790
22
12.8
21
68
12
90
35
10
15
38
1.83
5012--6010
22
45.7
22
66
17
253
34
14
9
40
1.79
5322--5407
23
3.7
23
84
9
104
37
12
6
43
1.70
5750--5847
21
4.5
21
76
15
92
33
14
9
42
1.77
6046--6096
22
2.2
23
82
13
68
33
21
13
31
1.92
8675--8721
20
2.5
18
86
6
67
40
2
6
51
1.39
10474--10507
2
17.0
2
100
0
68
50
0
0
50
1.00
16322--16368
23
2.0
23
91
0
76
40
14
10
34
1.81
26333--26368
14
2.6
14
91
8
56
30
0
22
47
1.52
37975--38008
7
4.9
7
96
0
59
44
26
2
26
1.69
37968--38008
21
2.0
21
85
0
55
43
26
4
24
1.74
42592--42663
36
2.0
36
100
0
144
19
8
19
52
1.70
45115--45158
19
2.2
20
84
11
56
29
4
6
59
1.44
63722--63793
36
2.0
36
100
0
144
52
16
13
16
1.74
65141--65195
29
2.0
29
85
7
78
41
9
1
47
1.46
73576--73619
13
3.5
13
78
6
54
63
2
34
0
1.07
74194--74234
22
1.9
22
85
5
57
39
7
17
36
1.77
84602--84704
50
2.1
50
100
0
206
22
21
15
40
1.90
90398--90428
3
10.3
3
92
0
53
35
3
0
61
1.12
92014--92292
66
4.2
66
86
4
364
26
14
25
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92014--92292
134
2.1
132
86
2
380
26
14
25
33
1.94
92256--92328
36
2.0
36
97
0
137
20
19
23
36
1.95
92189--92394
102
2.0
103
91
2
335
24
16
24
35
1.95
92292--92705
66
6.3
66
87
0
596
26
14
23
35
1.94
95126--95792
66
10.0
66
91
1
1001
26
14
25
33
1.94
118274--118310
19
1.9
19
88
0
56
29
21
29
18
1.97
119456--119486
16
2.0
15
93
6
53
35
0
6
58
1.24
124063--124145
42
2.0
43
88
7
125
34
21
18
25
1.96
125507--125539
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!