Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009217.1 Corchorus capsularis cultivar CVL-1 contig09238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26210
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:11 original size:1 final size:1

Alignment explanation


    Indices: 1--42  Score: 66
    Period size: 1  Copynumber: 42.0  Consensus size: 1

                 *                              *     
          1 AAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

         43 GAAGAAGAAG


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   1   37  1.00

ACGTcount: A:0.95, C:0.00, G:0.05, T:0.00


Consensus pattern (1 bp):   
A

Found at i:22415 original size:2 final size:2

Alignment explanation


    Indices: 22408--22435  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

      22398 GAATAATGAA

                                                     
      22408 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      22436 TTGTTTTCTC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.