Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009221.1 Corchorus capsularis cultivar CVL-1 contig09242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 165602
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:2576 original size:15 final size:16
Alignment explanation
Indices: 2548--2580 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
2538 TACTAATTTC
2548 AAGATTGTAAATTTAT
1 AAGATTGTAAATTTAT
*
2564 AAGATTG-ATATTTAT
1 AAGATTGTAAATTTAT
2579 AA
1 AA
2581 AGGATCCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (16 bp):
AAGATTGTAAATTTAT
Found at i:15705 original size:12 final size:12
Alignment explanation
Indices: 15670--15705 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
15660 AGGTTTCGCC
* *
15670 ACCTTTGAAGGC
1 ACCTTAGAAGGT
15682 ACCTTAGAAGGT
1 ACCTTAGAAGGT
15694 ACCTTAGAAGGT
1 ACCTTAGAAGGT
15706 CCAACCTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (12 bp):
ACCTTAGAAGGT
Found at i:21360 original size:29 final size:29
Alignment explanation
Indices: 21302--21374 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 29
21292 GTTAGGTTGA
*
21302 GGGAGCAAAACGTCCCAAAATTGAAATTCAG
1 GGGA-CAAAATGT-CCAAAATTGAAATTCAG
*
21333 GGGACAAAATGTCCAAGATT-AAAGTTCAG
1 GGGACAAAATGTCCAAAATTGAAA-TTCAG
*
21362 AGGACAAAATGTC
1 GGGACAAAATGTC
21375 TGAATGTTAC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 3 0.08
29 24 0.63
30 7 0.18
31 4 0.11
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.18
Consensus pattern (29 bp):
GGGACAAAATGTCCAAAATTGAAATTCAG
Found at i:37697 original size:104 final size:106
Alignment explanation
Indices: 37412--37776 Score: 560
Period size: 109 Copynumber: 3.4 Consensus size: 106
37402 AGTTTAGCCT
*
37412 TAATTTCACTAAGTTTAGCCCCAAATTAAAATTTTATTTTTATTTTAAGGATAAATTCCATAATT
1 TAATTTCACTAAGTTTAGCCCCAAATTAAAA-TTTATTTTTATTTTAAGGGTAAATTCCATAATT
*
37477 AATAATTTATTATTATAGGGTTTTAGAAATAAAATATATAAAAC
65 AATAATTTATTGTTATAGGGTTTTAGAAAT-AAA-ATATAAAAC
37521 TAATTTCACTAAGTTTAGCCCCAAATTAAAAATTTATTTTTATTTTAAGGGTAAATTCCATAATT
1 TAATTTCACTAAGTTTAGCCCCAAATT-AAAATTTATTTTTATTTTAAGGGTAAATTCCATAATT
*
37586 AATAATTTATTGTTATAGGGTTTTAGAAATAAAATACAAAAC
65 AATAATTTATTGTTATAGGGTTTTAGAAATAAAATATAAAAC
* *
37628 CAATTTCACTAAGTTTAGCCCCAAATT-AAATTT-TTTTTATTTTAAGGGTAAATTTCATAATTA
1 TAATTTCACTAAGTTTAGCCCCAAATTAAAATTTATTTTTATTTTAAGGGTAAATTCCATAATTA
* *
37691 ATAATTTAATGTTATAGGG-TTTAGAAATAAAATATATAAC
66 ATAATTTATTGTTATAGGGTTTTAGAAATAAAATATAAAAC
* * *
37731 TAA-TTCACTAAATTTAG-CCCAAATTAAAATTAAAATTTTATTTTAA
1 TAATTTCACTAAGTTTAGCCCCAAATTAAAATT-TATTTTTATTTTAA
37777 AGATTAGAAA
Statistics
Matches: 240, Mismatches: 12, Indels: 13
0.91 0.05 0.05
Matches are distributed among these distances:
101 8 0.03
102 18 0.08
103 21 0.09
104 58 0.24
105 6 0.03
107 34 0.14
108 3 0.01
109 88 0.37
110 4 0.02
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (106 bp):
TAATTTCACTAAGTTTAGCCCCAAATTAAAATTTATTTTTATTTTAAGGGTAAATTCCATAATTA
ATAATTTATTGTTATAGGGTTTTAGAAATAAAATATAAAAC
Found at i:58763 original size:3 final size:3
Alignment explanation
Indices: 58757--58796 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
58747 AAACAAAAAC
58757 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
58797 ATGAATGCGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:61473 original size:2 final size:2
Alignment explanation
Indices: 61466--61493 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
61456 ACTCAAAAGA
61466 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61494 CACAATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77345 original size:19 final size:20
Alignment explanation
Indices: 77299--77346 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
77289 TGTGGCACGC
*
77299 CACATGTACCAAAAAGTCGTGC
1 CACATGTACCAAAAA--CGTGA
77321 CACATGTACCAAAAA-GTGA
1 CACATGTACCAAAAACGTGA
77340 CACATGT
1 CACATGT
77347 CACGCCACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 10 0.40
22 15 0.60
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CACATGTACCAAAAACGTGA
Found at i:77351 original size:53 final size:53
Alignment explanation
Indices: 77266--77368 Score: 161
Period size: 53 Copynumber: 1.9 Consensus size: 53
77256 GACGTGGCAC
* **
77266 GCCACGTGTACCAAAAAGTGACATGTGGCACGCCACATGTACCAAAAAGTCGT
1 GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTCGT
* *
77319 GCCACATGTACCAAAAAGTGACACATGTCACGCCACGTGTACCAAAAAGT
1 GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGT
77369 GACACGTGAC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.17
Consensus pattern (53 bp):
GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTCGT
Found at i:77385 original size:31 final size:31
Alignment explanation
Indices: 77318--77416 Score: 117
Period size: 31 Copynumber: 3.2 Consensus size: 31
77308 CAAAAAGTCG
* *
77318 TGCCACATGTACCAAAAAGTGACACATGTCA
1 TGCCACATGTACCAAAAAGTGACACGTGACA
* *
77349 CGCCACGTGTACCAAAAAGTGACACGTGACA
1 TGCCACATGTACCAAAAAGTGACACGTGACA
** * * *
77380 TGCCACATGTTTCAAAAAATGGCACGTGGCA
1 TGCCACATGTACCAAAAAGTGACACGTGACA
77411 TGCCAC
1 TGCCAC
77417 GTGCACAAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 57 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.18
Consensus pattern (31 bp):
TGCCACATGTACCAAAAAGTGACACGTGACA
Found at i:82662 original size:81 final size:81
Alignment explanation
Indices: 82542--82711 Score: 295
Period size: 81 Copynumber: 2.1 Consensus size: 81
82532 AGATTTTAAG
*
82542 AAACCCATTAACGGTTCTTCATCTGCGTCCCGCGCCAAAGCGACCAAGCCCAAGAAGGAAGAAAG
1 AAACCCATTAACGGTTCTTCATCTGCGTCACGCGCCAAAGCGACCAAGCCCAAGAAGGAAGAAAG
82607 TGACGATGAAGATAAA
66 TGACGATGAAGATAAA
*
82623 AAACCCATTAACGGTTCTTCATCTGCGTCACGCGCCAAAGCGACCAAGCCCAAGAAGGAGGAAAG
1 AAACCCATTAACGGTTCTTCATCTGCGTCACGCGCCAAAGCGACCAAGCCCAAGAAGGAAGAAAG
* * *
82688 TGATGATGAAGATGAT
66 TGACGATGAAGATAAA
82704 AAACCCAT
1 AAACCCAT
82712 CTCCAGAAGA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.16
Consensus pattern (81 bp):
AAACCCATTAACGGTTCTTCATCTGCGTCACGCGCCAAAGCGACCAAGCCCAAGAAGGAAGAAAG
TGACGATGAAGATAAA
Found at i:94316 original size:13 final size:13
Alignment explanation
Indices: 94298--94356 Score: 68
Period size: 13 Copynumber: 4.6 Consensus size: 13
94288 AAAACCGAAA
94298 ATAATTTTTATAT
1 ATAATTTTTATAT
94311 ATAATTATTT-T-T
1 ATAATT-TTTATAT
*
94323 ATAATTTTTTTAT
1 ATAATTTTTATAT
* *
94336 TTATTTTTTATAT
1 ATAATTTTTATAT
94349 ATAATTTT
1 ATAATTTT
94357 CCTCTTTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
11 3 0.08
12 8 0.21
13 24 0.63
14 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATAATTTTTATAT
Found at i:95412 original size:109 final size:109
Alignment explanation
Indices: 95201--95496 Score: 423
Period size: 109 Copynumber: 2.7 Consensus size: 109
95191 TAAATTAAAA
* *
95201 TGGTAAAAATAAAAAAAATTATATAAAATATT-GAATTTAATTAAATGAAAATAGAGTTTTTAGT
1 TGGTAAAAAT-AAAATAATTATA-AAGATATTAG-ATTTAATTAAATGAAAATAGAGTTTTTAGT
* *
95265 AGAATAAAGTTTTATATTAGAAAAAATTTTAATATATCCAAATTTTT
63 AGAATAAAATTGTATATTAGAAAAAATTTTAATATATCCAAATTTTT
95312 TGGTAAAAATAAAATAATTATAAAGATATTAGATTTAATTAAATGAAAATAGAGTTTTTAGTAGA
1 TGGTAAAAATAAAATAATTATAAAGATATTAGATTTAATTAAATGAAAATAGAGTTTTTAGTAGA
* *
95377 ATAAAATTGTATATTAGAAAAATTTTTAGTATATCCAAATTTTT
66 ATAAAATTGTATATTAGAAAAAATTTTAATATATCCAAATTTTT
* * * *
95421 TGGTAAAAAGAAAGTAATTATAAAGATATTAGATTTAATTTAATTGAATAAAAATAGAGTTTCTA
1 TGGTAAAAATAAAATAATTATAAAGATATTAGATTTAA-TT-A---AATGAAAATAGAGTTTTTA
95486 GTAGAATAAAA
61 GTAGAATAAAA
95497 CTATAATAGT
Statistics
Matches: 169, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
109 116 0.69
110 14 0.08
111 11 0.07
114 28 0.17
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (109 bp):
TGGTAAAAATAAAATAATTATAAAGATATTAGATTTAATTAAATGAAAATAGAGTTTTTAGTAGA
ATAAAATTGTATATTAGAAAAAATTTTAATATATCCAAATTTTT
Found at i:97747 original size:6 final size:6
Alignment explanation
Indices: 97731--97760 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
97721 TTGTACTAGT
*
97731 GTTGAG ATTGAG GTTGAG GTTGAG GTTGAG
1 GTTGAG GTTGAG GTTGAG GTTGAG GTTGAG
97761 AGTCACTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (6 bp):
GTTGAG
Found at i:137818 original size:2 final size:2
Alignment explanation
Indices: 137813--137856 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
137803 AAAAAAAAAA
* *
137813 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AA AT -T AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
137853 AT AT
1 AT AT
137857 GGTAAAGCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:145000 original size:2 final size:2
Alignment explanation
Indices: 144993--145024 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
144983 GTGCTAATAC
144993 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
145025 GCTTTTTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:149059 original size:2 final size:2
Alignment explanation
Indices: 149052--149079 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
149042 AACTTCCCAC
149052 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
149080 ATATATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:159277 original size:42 final size:43
Alignment explanation
Indices: 159225--159318 Score: 138
Period size: 45 Copynumber: 2.2 Consensus size: 43
159215 AGTGCATTAC
* *
159225 CTAA-ATTCTA-CTCCATCTCTAGGTAATTCATCAAAATAAAG
1 CTAATATTCTACCACCATCTCTAGATAATTCATCAAAATAAAG
159266 CTAATATTCTACCCCACCATCTCTAGATAATTCATCAAAATAAAG
1 CTAATATTCTA--CCACCATCTCTAGATAATTCATCAAAATAAAG
159311 CTAATATT
1 CTAATATT
159319 AATTGTTGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
41 4 0.09
42 6 0.13
45 37 0.79
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.32
Consensus pattern (43 bp):
CTAATATTCTACCACCATCTCTAGATAATTCATCAAAATAAAG
Found at i:160696 original size:333 final size:330
Alignment explanation
Indices: 159573--161360 Score: 1907
Period size: 331 Copynumber: 5.4 Consensus size: 330
159563 ATCCGGTTTT
* * * *
159573 GAAGCATGAGAAGTCCTTCAATATTTTAGGCGTTGAGTTATATACTTTTTATGAGTATTGTGGCC
1 GAAGCATGAGAAGTCCTTCAATCTTTT-TGAGTTGAGTTATATATTTTTTATGAGTATTGTGGCC
* * *
159638 AAAAGTTGAAGAGAAATGTTTCGGGTCAA--TTTGCAAAATTTTAGCCGAAATCGTGTATTAACC
65 AAAAATTGAGGAGAAATGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACC
* * * * * **
159701 ATCGCGGTTTTTGGTTAAAAACGAGTTCC-GGGCCC-AGCTCAATGTTGCATGATTTTTGATGCC
130 ATCACGATTTTTGGTTAAAAACGAGTTCCGGGGCCCTGGCTCAGTTTTGCATGATTTTTGGCGCC
* * *
159764 AAGACTCATTGAAATATCTATATTCATCTAACAAAATCTTAGCCACATTGGGTTTAAGGATTTGT
195 AAGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTT-T
* * * * * * *
159829 TTGTATGAGCATCTTAATTCGGTATCGGTTTAATTAGAAATTAATTCGGAAAAAAAAGGAAAAAC
259 TTTTACGAGCATCTCAATCCGGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAAC
*
159894 AATATTA
324 TATATTA
* ** * * *
159901 GAGGTGTGAGAA-ACCTTTCAATATTTTTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGC
1 GAAGCATGAGAAGTCC-TTCAATCTTTTT-GAGTTGAGTTATATATTTTTTATGAGTATTGTGGC
* * ** * * *
159965 TAAAAATTGAGGAGAAATGTTTCAGGAGAATTTCTGCAAAATTTTAGCCTAAATCGTGTACCAAC
64 CAAAAATTGAGGAGAAATGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAAC
** ** * * * * * * *
160030 TGTCACTG-TTTTTGACTAAAAATGTGTTCCGGAGCCCTGACTCTGTTTTTGAATAATTTTTGGC
129 CATCAC-GATTTTTGGTTAAAAACGAGTTCCGGGGCCCTGGCTCAG-TTTTGCATGATTTTTGGC
* ** * * * *
160094 GCCAAGTCTCATCAAAATATTTACATCCATCTAACCAAATCTCACCCACATTGGATTTAAGGATT
192 GCCAAGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATT
* * ** *
160159 TATTTTACGAGCATCTGAATCATGTTTCGATTTAATTAGAAATCAATTCGG-AAAAATAGG-AAA
257 TTTTTTACGAGCATCTCAATCCGGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAA
160222 ACTGATATTA
322 ACT-ATATTA
* * * * * * * **
160232 GAAGCGTGAAAAGT-CTT---TCATTTGGCGTTGAATTATTTATTTTTTATGAGTATCATGGCCA
1 GAAGCATGAGAAGTCCTTCAATCTTTTTGAGTTGAGTTATATATTTTTTATGAGTATTGTGGCCA
* * **
160293 AAAATTGAGGA-AAATTCTTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAATT
66 AAAATTGAGGAGAAA-TGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACC
* *
160357 ATCACGATTTTTGGTTAAAAACGCGTTCCGGGGCCCTGGCTCACTTTTGCATGATTTTTGGCGCC
130 ATCACGATTTTTGGTTAAAAACGAGTTCCGGGGCCCTGGCTCAGTTTTGCATGATTTTTGGCGCC
* *
160422 AAGACTCATTGAAATATCTATATTTATCTAACGAAATCTCAGCCACATTGGATTTAAGGATTTTT
195 AAGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGA--TTT
* **
160487 TTTTTACAAGCATCTCAATCCGGTTTCGATTTAATTAGAAATTAATGAGGAAAAAATAGGAAAAA
258 TTTTTACGAGCATCTCAATCCGGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAA
160552 CTATATTA
323 CTATATTA
* *
160560 GAAGCATGGGAAGTCCTTCAATCTTTTTGAGTTGAGTTATATATTTTTTTATGAGTATTGTAGCC
1 GAAGCATGAGAAGTCCTTCAATCTTTTTGAGTTGAGTTATATA-TTTTTTATGAGTATTGTGGCC
* * * * * * *
160625 AAAAATTTAGGAGAAATGTGTCAGGTCAATTTCTGTAAAATTTTAGCGGAAATCGTGTATTAACC
65 AAAAATTGAGGAGAAATGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACC
* * * *
160690 ATCACGATTTTT--TACAAGAAACGAGTTACGGGGCTCC-GGCTCTGTTTTGAATGATTTTTGGC
130 ATCACGATTTTTGGT-TAA-AAACGAGTTCCGGGGC-CCTGGCTCAGTTTTGCATGATTTTTGGC
* * * * * * ** * * *
160752 GTCAAGTCTCATTAAAATACCTATATTAATATAACCATTTCTCACCCATAGTGGATTTAAGGATT
192 GCCAAGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATT
* * ** * * *
160817 TGTTTTACGAGCATCTGAATCATGTTTCGATTTAATTTGCAATTAAATCGGAAAAAATAGGAAAA
257 TTTTTTACGAGCATCTCAATCCGGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAA
* *
160882 CCGATATTA
322 ACTATATTA
* * * * * * *
160891 GAAG-AGTGAAAACT-TTTCAATCTTTTTGACATTGATTTATATATATATTTT-TGAATATCGTG
1 GAAGCA-TGAGAAGTCCTTCAATCTTTTTGA-GTTGAGTTATATAT-T-TTTTATGAGTATTGTG
* * * *
160953 GACAAAAATTGAGGA-AAATTCTTTCGGGTAAATTTTTGCAAAATTTTAGCCGAAATCATGTACT
62 GCCAAAAATTGAGGAGAAA-TGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACT
* * * * * * *
161017 AACCATCACAATTTTTTGCTAAAAACGTGTTTCGGGGGCCCT-ACTCAGTTTTGCATGATATTTG
126 AACCATCACGATTTTTGGTTAAAAACGAG-TTCCGGGGCCCTGGCTCAGTTTTGCATGATTTTTG
* * * * * *
161081 ACACCAAGACTCATTGAAATATCTATATTTATCTAACGAAATATCAGCAACATTGGATTTAAGGA
190 GCGCCAAGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGA
161146 TTTTTTTTAC-AGGCATCTCAATCCGGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATAGG
255 TTTTTTTTACGA-GCATCTCAATCCGGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAATAGG
161210 AAAAACTATATTA
318 AAAAACTATATTA
* * *
161223 GAAGCATGAGAAATCCTTCAATCTTTTTGAGTTGAGTTATAT-TTTTTTATGAGTATTTTGGCAA
1 GAAGCATGAGAAGTCCTTCAATCTTTTTGAGTTGAGTTATATATTTTTTATGAGTATTGTGGCCA
*
161287 AAAATTGAGGAGAAATGTTTCGGGTCAATTTTTGCATAATTTTAGCCGAAATCGTGTA--AACCA
66 AAAATTGAGGAGAAATGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCA
* *
161350 TTACGGTTTTT
131 TCACGATTTTT
161361 TAAATAAAAA
Statistics
Matches: 1193, Mismatches: 227, Indels: 80
0.80 0.15 0.05
Matches are distributed among these distances:
325 74 0.06
326 117 0.10
327 51 0.04
328 117 0.10
329 13 0.01
330 138 0.12
331 311 0.26
332 116 0.10
333 251 0.21
334 5 0.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (330 bp):
GAAGCATGAGAAGTCCTTCAATCTTTTTGAGTTGAGTTATATATTTTTTATGAGTATTGTGGCCA
AAAATTGAGGAGAAATGTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCA
TCACGATTTTTGGTTAAAAACGAGTTCCGGGGCCCTGGCTCAGTTTTGCATGATTTTTGGCGCCA
AGACTCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTTTT
TTACGAGCATCTCAATCCGGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATAGGAAAAACTA
TATTA
Found at i:162229 original size:331 final size:338
Alignment explanation
Indices: 161495--162275 Score: 1082
Period size: 331 Copynumber: 2.3 Consensus size: 338
161485 CTCTGGCTAC
* ** * ** * * *
161495 GTTTTGCATGATTTTTGGCGTCAAGTCTCATTGAAATATCTATATCCATCTAACCAAATCTCACC
1 GTTTTACATGATTTTTGGCACCAAGACTCATTGAAATATCTATATTTATCTAACGAAATCCCA-G
*
161560 CACATTAGATTTGAGAGTTTGTTCTTTTACGAGCATCTGAATCTTTTTTGGTATTTAATTTGAAA
65 CACATTAGATTTGAGGGTTTG-T-TTTTACGAGCATCTGAATCTTTTTTGGTATTTAATTTGAAA
** *
161625 TTAATTCAGAAAAAATAGGAAGACCGATATTAGAAGAGTGAAAAACCTTTCAATTGTTTTGGCGT
128 TTAATTCAGAAAAAATAGGAAGACCGATATTAGAAGAGTGAAAAACCTTTCAATAATTTTGGCAT
* * *
161690 TGTAATATATATATATATATATATATTTTAGTATCGTGGTAAAAAATTGAGGAAAATTCTTTCGG
193 TGTAATATATATATATATATATATA--TTAGTATCGTGGCAAAAAATTGAGGAAAATCCTTCCGG
161755 GTAAATTTTTGCAAAATTTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTGACAAAAACG
256 GTAAATTTTTGCAAAATTTTTAGCCGAAAATCGTG-A-TAACCATCACGGTTTTTGACAAAAACG
* *
161820 TGTTCCGGGTCCCCTGTTCA
319 CGTTCCGGGTCCCCGGTTCA
* * *
161840 GTTTTATATGATTTTTGGCACCAAGACTCATCGAAATATCTATTTTTATCTAACGAAATCCCAGT
1 GTTTTACATGATTTTTGGCACCAAGACTCATTGAAATATCTATATTTATCTAACGAAATCCCAG-
* *
161905 CACATTGGATTTGAGGGTTTGTTTTTACGGGCATCTGAATCTTTTTTGG-ATTTAATTTG-AATT
65 CACATTAGATTTGAGGGTTTGTTTTTACGAGCATCTGAATCTTTTTTGGTATTTAATTTGAAATT
*
161968 AATTCGGAAAAAATAGGAAGACCGATATTAGAAGAGT-AAAAAGCCTTTCAATAATTTTGGCATT
130 AATTCAGAAAAAATAGGAAGACCGATATTAGAAGAGTGAAAAA-CCTTTCAATAATTTTGGCATT
*
162032 G-AA-A-ATATATATATATATATA-TAGTATCGTGGCCAAAAATTGAGGAAAATCCTTCCGGGTA
194 GTAATATATATATATATATATATATTAGTATCGTGGCAAAAAATTGAGGAAAATCCTTCCGGGTA
*
162093 AATTTTTGCAAAA-TTTTAGCC-AAAATCGTG-T-ACCATCACGGTTTTTGGCTAAAAACGCGTT
259 AATTTTTGCAAAATTTTTAGCCGAAAATCGTGATAACCATCACGGTTTTTGAC-AAAAACGCGTT
*
162154 CCGGGTCCCCCGGTTTA
323 CCGGGT-CCCCGGTTCA
*
162171 GTTTTACATGATTTTTGGCACCAAGACTCATTGAAATATCTAAATTTATCTAACGAAATCCCAGC
1 GTTTTACATGATTTTTGGCACCAAGACTCATTGAAATATCTATATTTATCTAACGAAATCCCAGC
* * * *
162236 AACATTTGATTTAAGGATTT-TTTTTACGAGCATCTCAATC
66 -ACATTAGATTTGAGGGTTTGTTTTTACGAGCATCTGAATC
162276 CGGTTTTGAT
Statistics
Matches: 395, Mismatches: 36, Indels: 25
0.87 0.08 0.05
Matches are distributed among these distances:
329 17 0.04
330 36 0.09
331 84 0.21
333 9 0.02
334 8 0.02
335 49 0.12
338 17 0.04
339 1 0.00
340 7 0.02
341 59 0.15
342 10 0.03
343 26 0.07
344 1 0.00
345 71 0.18
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (338 bp):
GTTTTACATGATTTTTGGCACCAAGACTCATTGAAATATCTATATTTATCTAACGAAATCCCAGC
ACATTAGATTTGAGGGTTTGTTTTTACGAGCATCTGAATCTTTTTTGGTATTTAATTTGAAATTA
ATTCAGAAAAAATAGGAAGACCGATATTAGAAGAGTGAAAAACCTTTCAATAATTTTGGCATTGT
AATATATATATATATATATATATTAGTATCGTGGCAAAAAATTGAGGAAAATCCTTCCGGGTAAA
TTTTTGCAAAATTTTTAGCCGAAAATCGTGATAACCATCACGGTTTTTGACAAAAACGCGTTCCG
GGTCCCCGGTTCA
Found at i:164689 original size:325 final size:320
Alignment explanation
Indices: 163874--165602 Score: 1748
Period size: 326 Copynumber: 5.3 Consensus size: 320
163864 GACCGATCAA
* * **
163874 CCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTTAATCTTGTTTCGATTTAATTATATTTA
1 CCACATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
* * * ** * * *
163939 AAATCTGGAAAAATATGATAAACGATCCTAGAAGAGTGAAAAACCCTTCAAT-TTTTATGGAGTT
65 AATTC-GGAAAAAAATGAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATCTTTT-TGGCGTT
* * * * *
164003 GAATTATATATTTTTTCTGAGAATTGTGGCAAAAAATTGAGAAACAACTTTTCGGGTTAGTTTTT
128 GAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTT
* * * *
164068 -G-CAAAAT--TTTAGCTGAAATCGTGTTATCACGGTTTTTGGCTAAAAACGCGTTCCG-GAGCC
193 AGCCGAAATCGTGTA-CT--AA-C---CTATCACGGTTTTTGGCT-AAAACGCGTTTCGAG-GCC
* * * * * * * * * *
164128 CCGTCTAAAATTTCCATGATTTTTTG-CACAAAGAATCTTTGAAATATCTATATTCATCGAACCA
249 TCGACTCAATTTTGCATG-GTTTTTGACAAAAAGACTCCTTGAAATATCTATATTCATCTAACCA
*
164192 ATTCTCAG
313 AATCTCAG
* * * * *
164200 CCACATTGGATATAAGGATTTATTTTTATGGGCATCTGAATCTTGTTT-GCATTTAATTATAAAT
1 CCACATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCG-ATTTAATTAGAAAT
* * * * * *
164264 TAATTCGGGAAAAAAATGGGAAAACGATTTTAGAAGCGTG-AAAACCCTTC-ATTTTTTCTGGCA
64 AAATTC-GGAAAAAAAT-GAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATCTTTT-TGGCG
* *
164327 TTGAATTATATATTTTTTACGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTT
126 TTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTT
* * *
164392 TTAGCCGAAATCGTGTACTAACCATATCACAGTTTTTGGCTAAATACGCGTTTCGAAGCCACGAC
191 TTAGCCGAAATCGTGTACTAACC-TATCACGGTTTTTGGCTAAA-ACGCGTTTCGAGGCCTCGAC
* * * * * *
164457 TCAGTTTTGCACGGTTTTAGATAAAAAAGTCTCCTTGAAATATCTATATTCATCTAACTAAATCT
254 TCAATTTTGCATGGTTTTTGA-CAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCT
*
164522 CAA
318 CAG
* * * *
164525 CCACAATTGATTCAAGAATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAAAAATA
1 CCAC-ATTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
* * ** * *
164590 AATTCGGAAAAATATGAAAAACGATATCAGAAGCGTGAAAAATCCGGCAATCTTTTTGGCTTTAA
65 AATTCGGAAAAAAATGAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATCTTTTTGGCGTTGA
* * *
164655 ATTATAGATTTTTTATGAGTACTGTGGCCAAAAAAATTGA-AAAAAAATTATTACTGGTCAGTTT
130 ATTATATATTTTTTATGAGTATTGTGG-C-AAAAAATTGAGAAAAAAATT-TT-CGGGTCAGTTT
* *
164719 TTAGCGGAAAAT-GTGTACGT----TATCACGATTTTTGGCTAAAAACGCGTTTCG-GGACCTCG
191 TTAGCCG-AAATCGTGTAC-TAACCTATCACGGTTTTTGGCT-AAAACGCGTTTCGAGG-CCTCG
* * * * * *
164778 ACTCACTTTTGCATGGTTTTTGACATAAAGACTCCCTGAAATATCTATATTCGTCTAACCGATTC
252 ACTCAATTTTGCATGGTTTTTGACAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
164843 TCAG
317 TCAG
* * *
164847 CCACAATTGATTTAATGATTTATTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
1 CCAC-ATTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
* * * * *
164912 AATTCAGAAAAAAATGAAAAACGATATTAGAAGCATGAAAAATCCTTC-TTTTTTTTTGCGTTGA
65 AATTCGGAAAAAAATGAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATCTTTTTGGCGTTGA
* * *
164976 ATTATATATTTTTTATGAGTATTTTGGC-AAAAATTTACAAAAAAA-TTTCGGGTCAGATTTTTA
130 ATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAG-TTTTTA
** * *
165039 GCCGAAATCGTGTACTAACC-ATCACGGTTTTTGGCTAGAAACGCGTTTCCTGGTCTCGACACAA
194 GCCGAAATCGTGTACTAACCTATCACGGTTTTTGGCTA-AAACGCGTTTCGAGGCCTCGACTCAA
* * *
165103 TTTTGCATGG-TTTTGACAGAATGACTCATTGAAATATCTATATTCATCTAA-CAAGATCTCAG
258 TTTTGCATGGTTTTTGACAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAA-ATCTCAG
* * * * *
165165 CCACATTGAACTTAAGGATTGGTTTTTAAGAGAATCTAAATCTTGTTTCGATTTAATTAGAAATA
1 CCACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
* * *
165230 AATTAGGAAAAAAATTTATGAAAAACGATATTAGAAGCGTAAAAAATCCTGCAATCTTTTTGGCG
65 AATTCGG-AAAAAA---ATGAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATCTTTTTGGCG
* * * * * * *
165295 TCGAATTATATGTTTTTTTAAGAATATTGTGGCCAAAATTTGAGAAAAAAAAATTT-GGGTCAGT
126 TTGAATTATAT-ATTTTTTATGAGTATTGTGGCAAAAAATTGAG-AAAAAAATTTTCGGGTCAGT
* * *
165359 TTTTAGCCGAAATCGTATACTAACC-ATCACGGTTTTTGACTAGAAACCCGTTTC-AGGGCCTCG
189 TTTTAGCCGAAATCGTGTACTAACCTATCACGGTTTTTGGCTA-AAACGCGTTTCGA-GGCCTCG
* * *
165422 ACT-AAGTTTTGCATGGTTTTTGACATAAAGACTCCTTGAAATATCTATATTCATCCAACTAAAT
252 ACTCAA-TTTTGCATGGTTTTTGACAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAAT
*
165486 CTTAG
316 CTCAG
* * * * *
165491 CCACAATTGATTTAAGGAATTGTGTTTACAAGCATTTGAATGTTGTTTCGATTTAATTAGAAATA
1 CCAC-ATTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
*
165556 AATTCGGAAAAAAAAATGAAAAACGATATTAGAAGTGTGAAAAATCC
65 AATTCGG--AAAAAAATGAAAAACGATATTAGAAGCGTGAAAAATCC
Statistics
Matches: 1179, Mismatches: 174, Indels: 102
0.81 0.12 0.07
Matches are distributed among these distances:
316 12 0.01
317 23 0.02
318 109 0.09
319 57 0.05
320 3 0.00
321 35 0.03
322 170 0.14
323 95 0.08
324 138 0.12
325 187 0.16
326 277 0.23
327 58 0.05
328 10 0.01
329 2 0.00
330 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (320 bp):
CCACATTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAA
ATTCGGAAAAAAATGAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATCTTTTTGGCGTTGAA
TTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGC
CGAAATCGTGTACTAACCTATCACGGTTTTTGGCTAAAACGCGTTTCGAGGCCTCGACTCAATTT
TGCATGGTTTTTGACAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAG
Found at i:165423 original size:644 final size:644
Alignment explanation
Indices: 164167--165602 Score: 1823
Period size: 644 Copynumber: 2.2 Consensus size: 644
164157 AAAGAATCTT
* * ***
164167 TGAAATATCTATATTCATCGAACCAATTCTCAGCCAC-ATTGGATATAAGGATTTATTTTTATGG
1 TGAAATATCTATATTCATCCAACCAATTCTCAGCCACAATT-GATTTAAGGATTTATTTTTACAA
* * * * *
164231 GCATCTGAATCTTGTTT-GCATTTAATTATAAATTAATTCGGGAAAAAAATGGGAAAACGATTTT
65 GCATCTGAATCTTGTTTCG-ATTTAATTAGAAATAAATTCGAGAAAAAAAT-GAAAAACGATATT
*
164295 AGAAGCGTG-AAAACCCTTCATTTTTTCTGGCATTGAATTATATATTTTTTACGAGTATTGTGGC
128 AGAAGCGTGAAAAATCCTTCATTTTTTCTGGCATTGAATTATATATTTTTTACGAGTATTGTGGC
* *
164359 AAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATATCACAG
193 AAAAAATTGACAAAAAACATTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCA-ATCACAG
* * * *
164424 TTTTTGGCTAAATACGCGTTTCGAAGCCACGACTCAGTTTTGCACGGTTTTAGATAAAAAAGTCT
257 TTTTTGGCTAAATACGCGTTTCCAAGCCACGACACAATTTTGCACGGTTTTAGATAAAAAAGACT
* * *
164489 CCTTGAAATATCTATATTCATCTAACTAAATCTCAACCACAATTGATTCAAGAATTTGTTTTTAC
322 CATTGAAATATCTATATTCATCTAACTAAATCTCAACCACAATTGATTCAAGAATTGGTTTTTAA
* *
164554 GAGCATCTAAATCTTGTTTCGATTTAATTAAAAATAAATTCGGAAAAATATGAAAAACGATATCA
387 GAGAATCTAAATCTTGTTTCGATTTAATTAAAAATAAATTAGGAAAAATATGAAAAACGATATCA
* * * * *
164619 GAAGCGTGAAAAATCCGGCAATCTTTTTGGCTTTAAATTATAGATTTTTTATGAGTACTGTGGCC
452 GAAGCGTAAAAAATCCGGCAATCTTTTTGGCGTCAAATTATAGATTTTTTAAGAATACTGTGGCC
* * * *
164684 AAAAAAATTGAAAAAAAATTATTACTGGTCAGTTTTTAGCGGAAAATGTGTACGTTATCACGATT
517 -AAAAAATTGAAAAAAAATAATTA-TGGTCAGTTTTTAGCCGAAAATGTATACGTCATCACGATT
* * *
164749 TTTGGCTAAAAACGCGTTTCGGGACCTCGACTCACTTTTGCATGGTTTTTGACATAAAGACTCCC
580 TTTGACTAAAAACCCGTTTCGGGACCTCGACTAACTTTTGCATGGTTTTTGACATAAAGACTCCC
* * * *
164814 TGAAATATCTATATTCGTCTAACCGATTCTCAGCCACAATTGATTTAATGATTTATTTTTACAAG
1 TGAAATATCTATATTCATCCAACCAATTCTCAGCCACAATTGATTTAAGGATTTATTTTTACAAG
164879 CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-AGAAAAAAATGAAAAACGATATTAGA
66 CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAGAAAAAAATGAAAAACGATATTAGA
* * * * * *
164943 AGCATGAAAAATCCTTC-TTTTTTTTTGCGTTGAATTATATATTTTTTATGAGTATTTTGGC-AA
131 AGCGTGAAAAATCCTTCATTTTTTCTGGCATTGAATTATATATTTTTTACGAGTATTGTGGCAAA
* *
165006 AAATTTACAAAAAA-ATTTCGGGTCAGATTTTTAGCCGAAATCGTGTACTAACC-ATCACGGTTT
196 AAATTGACAAAAAACATTTCGGGTCAG-TTTTTAGCCGAAATCGTGTACTAACCAATCACAGTTT
** * * * * * *
165069 TTGGCTAGAA-ACGCGTTTCCTGGTCTCGACACAATTTTGCATGGTTTT-GA-CAGAATGACTCA
260 TTGGCTA-AATACGCGTTTCCAAGCCACGACACAATTTTGCACGGTTTTAGATAAAAAAGACTCA
* *
165131 TTGAAATATCTATATTCATCTAAC-AAGATCTCAGCCAC-ATTGAACTT-AAGGATTGGTTTTTA
324 TTGAAATATCTATATTCATCTAACTAA-ATCTCAACCACAATTG-A-TTCAAGAATTGGTTTTTA
*
165193 AGAGAATCTAAATCTTGTTTCGATTTAATTAGAAATAAATTAGGAAAAAAATTTATGAAAAACGA
386 AGAGAATCTAAATCTTGTTTCGATTTAATTAAAAATAAATTAGG--AAAAA--TATGAAAAACGA
* * * * *
165258 TATTAGAAGCGTAAAAAATCCTGCAATCTTTTTGGCGTCGAATTATATGTTTTTTTAAGAATATT
447 TATCAGAAGCGTAAAAAATCCGGCAATCTTTTTGGCGTCAAATTATA-GATTTTTTAAGAATACT
*
165323 GTGGCC-AAAATTTGAGAAAAAAA-AATT-TGGGTCAGTTTTTAGCCG-AAATCGTATAC-TAAC
511 GTGGCCAAAAAATTGA-AAAAAAATAATTAT-GGTCAGTTTTTAGCCGAAAAT-GTATACGT---
* * *
165383 CATCACGGTTTTTGACTAGAAACCCGTTTCAGGG-CCTCGACTAAGTTTTGCATGGTTTTTGACA
570 CATCACGATTTTTGACTAAAAACCCGTTTC-GGGACCTCGACTAACTTTTGCATGGTTTTTGACA
*
165447 TAAAGACTCCT
634 TAAAGACTCCC
* * * * * *
165458 TGAAATATCTATATTCATCCAACTAAATCTTAGCCACAATTGATTTAAGGAATTGTGTTTACAAG
1 TGAAATATCTATATTCATCCAACCAATTCTCAGCCACAATTGATTTAAGGATTTATTTTTACAAG
* * *
165523 CATTTGAATGTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAAATGAAAAACGATATTAG
66 CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-GAGAAAAAAATGAAAAACGATATTAG
*
165588 AAGTGTGAAAAATCC
130 AAGCGTGAAAAATCC
Statistics
Matches: 686, Mismatches: 81, Indels: 45
0.84 0.10 0.06
Matches are distributed among these distances:
639 6 0.01
640 95 0.14
641 10 0.01
642 71 0.10
643 24 0.03
644 254 0.37
645 80 0.12
646 55 0.08
647 87 0.13
648 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (644 bp):
TGAAATATCTATATTCATCCAACCAATTCTCAGCCACAATTGATTTAAGGATTTATTTTTACAAG
CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAGAAAAAAATGAAAAACGATATTAGA
AGCGTGAAAAATCCTTCATTTTTTCTGGCATTGAATTATATATTTTTTACGAGTATTGTGGCAAA
AAATTGACAAAAAACATTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCAATCACAGTTTT
TGGCTAAATACGCGTTTCCAAGCCACGACACAATTTTGCACGGTTTTAGATAAAAAAGACTCATT
GAAATATCTATATTCATCTAACTAAATCTCAACCACAATTGATTCAAGAATTGGTTTTTAAGAGA
ATCTAAATCTTGTTTCGATTTAATTAAAAATAAATTAGGAAAAATATGAAAAACGATATCAGAAG
CGTAAAAAATCCGGCAATCTTTTTGGCGTCAAATTATAGATTTTTTAAGAATACTGTGGCCAAAA
AATTGAAAAAAAATAATTATGGTCAGTTTTTAGCCGAAAATGTATACGTCATCACGATTTTTGAC
TAAAAACCCGTTTCGGGACCTCGACTAACTTTTGCATGGTTTTTGACATAAAGACTCCC
Done.