genome.fa.s9222.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009222.1 Corchorus capsularis cultivar CVL-1 contig09243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146527

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--887	322	2.7	321	85	5	1106	35	13	16	35	1.87
1036--1066	15	2.1	15	93	0	53	22	9	58	9	1.59
9919--10000	41	2.0	41	100	0	164	48	9	14	26	1.75
13849--14070	115	1.9	115	88	1	338	36	18	19	25	1.95
18203--18913	230	3.0	237	89	3	1019	33	20	20	26	1.97
38511--38536	2	13.0	2	100	0	52	50	0	0	50	1.00
42248--42276	2	14.5	2	100	0	58	48	0	0	51	1.00
43483--43528	15	2.9	16	77	6	58	41	30	15	13	1.85
49943--50033	45	2.0	44	91	2	146	38	17	17	26	1.92
61596--61628	2	16.5	2	100	0	66	51	0	0	48	1.00
79504--79536	17	1.9	17	93	0	57	60	0	18	21	1.36
79896--79922	12	2.2	12	100	0	54	22	33	11	33	1.89
80367--80409	21	2.0	21	86	0	59	6	13	32	46	1.71
80544--80581	18	2.2	17	86	13	51	7	36	0	55	1.29
86748--86793	23	2.0	23	86	0	65	0	17	8	73	1.07
91860--92037	88	2.0	88	92	0	293	20	17	14	47	1.82
96007--96040	14	2.3	15	90	5	52	2	8	2	85	0.80
102263--102299	2	18.5	2	100	0	74	48	0	0	51	1.00
105404--105452	3	16.3	3	100	0	98	0	32	0	67	0.91
107641--107680	19	2.1	19	100	0	80	30	15	5	50	1.65
110160--110261	52	1.9	53	84	2	134	37	25	19	17	1.94
110212--110288	31	2.5	30	77	4	82	37	25	19	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111031--111096	26	2.5	26	83	9	89	34	0	12	53	1.38
111105--111158	23	2.3	23	100	0	108	48	0	16	35	1.47
116442--116879	54	8.5	54	74	15	336	9	28	24	37	1.86
116502--116677	96	1.8	97	92	1	300	6	28	25	39	1.81
117154--117230	37	2.1	37	100	0	154	19	16	18	45	1.86
118196--124470	332	19.2	327	73	12	4418	37	17	14	31	1.89
118893--124478	982	5.7	982	92	2	9043	37	17	14	31	1.90
124932--125324	26	14.8	25	77	16	325	35	21	12	30	1.91
124990--125324	51	6.2	51	82	11	323	35	21	13	29	1.92
124990--125324	26	12.3	28	84	10	355	35	21	13	29	1.92
125261--125310	15	3.3	15	73	15	57	36	16	12	36	1.85
124990--125324	83	4.1	83	81	11	309	35	21	13	29	1.92
125092--125350	31	8.8	31	85	10	214	35	21	12	30	1.91
125326--125448	34	3.6	33	77	6	113	41	18	17	22	1.90
132947--133006	31	1.9	32	89	3	95	35	18	3	43	1.67
133317--133359	19	2.1	21	84	16	56	27	6	2	62	1.33
133525--133627	22	4.6	22	71	11	84	35	9	17	36	1.83
133526--133612	44	2.0	43	82	6	104	35	10	18	35	1.85
133764--134081	22	14.3	22	69	10	110	40	9	16	34	1.80
133869--134081	22	9.6	23	75	10	133	42	9	13	34	1.77
134187--134259	19	3.6	20	79	7	76	42	9	15	32	1.79
134225--134761	22	24.7	22	68	13	157	39	9	14	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134723--134776	22	2.5	21	82	11	56	46	5	9	38	1.59
134785--134899	54	2.0	54	86	9	158	36	15	21	26	1.93
135962--136065	51	2.0	51	94	0	181	23	18	23	35	1.95
142993--143027	15	2.2	16	95	5	63	25	5	5	62	1.40
145596--145650	26	2.2	24	78	9	56	32	10	14	41	1.81
145606--145668	26	2.4	26	82	10	67	25	15	15	42	1.87
146091--146184	48	2.0	48	93	0	161	48	7	18	25	1.73
146439--146476	11	3.5	11	89	10	51	39	0	2	57	1.12

Tables:   1

The End!