Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009224.1 Corchorus capsularis cultivar CVL-1 contig09245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17063

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
683--721
21
2.0
20
85
10
53
15
5
5
74
1.17
1227--1251
6
4.2
6
100
0
50
0
48
20
32
1.50
3929--3959
3
10.3
3
100
0
62
0
0
32
67
0.91
3958--3982
1
25.0
1
100
0
50
0
0
0
100
0.00
5801--5961
33
4.9
33
83
1
189
11
30
42
16
1.83
5801--5961
65
2.5
66
82
3
191
11
30
42
16
1.83
6364--6396
17
1.9
17
93
0
57
30
33
6
30
1.82
6541--6601
21
3.0
21
90
4
97
31
31
14
22
1.94
6541--6601
20
3.0
20
92
2
95
31
31
14
22
1.94
9586--9949
156
2.3
157
80
7
395
29
15
20
33
1.94
12075--12105
2
15.5
2
100
0
62
51
0
0
48
1.00
12391--12530
69
2.0
70
95
1
255
35
3
22
37
1.72
12921--13017
49
1.9
50
89
4
151
54
11
6
27
1.59
14491--14526
17
2.1
17
89
0
54
25
19
19
36
1.95
15133--15164
16
2.0
16
93
0
55
31
3
21
43
1.68

Tables:   1

The End!