Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009225.1 Corchorus capsularis cultivar CVL-1 contig09246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15891

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35--277
81
3.2
78
87
9
333
49
0
12
37
1.44
119--277
70
2.2
71
88
4
230
50
0
11
36
1.44
177--510
166
2.0
166
99
0
659
46
5
14
34
1.66
530--586
6
10.3
6
82
17
79
49
0
15
35
1.45
530--574
17
2.6
17
96
3
81
48
0
15
35
1.45
530--586
23
2.6
21
86
10
87
49
0
15
35
1.45
1497--1531
17
1.9
19
88
11
56
34
17
0
48
1.47
2044--2150
53
2.0
53
92
3
180
40
5
9
44
1.60
3142--3198
26
2.2
25
87
9
80
43
15
5
35
1.70
4406--4526
58
2.1
58
80
9
131
43
9
6
40
1.62
4508--4568
30
2.0
30
90
0
95
40
16
1
40
1.58
4891--5220
141
2.4
141
91
3
540
37
10
10
42
1.72
7954--7987
13
2.5
14
85
9
52
0
14
2
82
0.79
8330--8444
60
1.9
61
82
8
146
43
7
13
35
1.72
8304--8513
22
9.7
22
72
16
127
41
8
13
36
1.76
8304--8513
44
4.9
44
72
16
145
41
8
13
36
1.76
8456--8524
22
3.1
22
85
4
70
34
10
15
39
1.82
10123--10165
14
3.1
14
77
9
52
79
0
18
2
0.85
10946--11004
28
2.1
28
83
0
73
30
25
8
35
1.86
10958--11018
28
2.2
28
82
5
70
36
24
11
27
1.90
11390--11434
14
3.3
14
81
6
56
31
0
8
60
1.28
11853--11898
15
3.1
15
87
9
60
23
6
6
63
1.43

Tables:   1

The End!