Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009231.1 Corchorus capsularis cultivar CVL-1 contig09252, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20073

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4957--4983
1
27.0
1
100
0
54
0
0
0
100
0.00
5693--5749
16
3.6
16
79
13
64
49
31
14
5
1.65
6151--6197
10
4.5
10
79
12
51
40
0
2
57
1.11
6257--6363
33
3.2
33
85
0
133
15
36
33
14
1.88
6533--6577
21
2.1
21
91
4
72
33
8
35
22
1.85
6888--7330
166
2.7
164
84
3
539
29
14
16
39
1.88
7406--7438
12
2.8
12
86
13
50
39
3
0
57
1.14
11485--11530
11
4.3
11
81
15
60
71
6
2
19
1.18
11480--11517
11
3.2
12
88
11
60
73
7
0
18
1.06
11480--11531
21
2.3
24
83
12
74
69
7
1
21
1.24
11485--11548
30
2.0
31
85
8
85
70
6
3
20
1.23
15194--15261
27
2.4
27
76
9
66
32
11
7
48
1.67
15205--15257
27
2.0
27
85
7
72
28
11
7
52
1.64
17394--17427
7
4.7
7
88
3
50
14
2
11
70
1.27
17715--17783
27
2.6
27
95
0
120
44
18
14
21
1.85
18648--18971
178
1.8
178
85
4
456
34
15
15
34
1.89
19814--19842
2
15.0
2
92
7
51
48
0
0
51
1.00
20044--20073
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!