Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009234.1 Corchorus capsularis cultivar CVL-1 contig09255, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23


Found at i:1100 original size:20 final size:20

Alignment explanation


    Indices: 1084--1124  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1074 AAATCAAAGT

                             *  
       1084 AAAACCAAGATAATCAATCC
          1 AAAACCAAGATAATCAAACC

                       *  *     
       1104 AAAACCAAGATTATAAAACC
          1 AAAACCAAGATAATCAAACC

             
       1124 A
          1 A

       1125 GATCAGTCAA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.59, C:0.22, G:0.05, T:0.15


Consensus pattern (20 bp):   
AAAACCAAGATAATCAAACC
Done.