Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009235.1 Corchorus capsularis cultivar CVL-1 contig09256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20326

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2048--2097
25
2.0
25
88
0
73
38
24
8
30
1.84
2349--2689
86
3.9
86
87
6
465
47
8
17
27
1.75
2364--2727
45
8.5
42
81
9
389
47
8
16
27
1.75
2378--2805
215
2.0
213
81
11
498
46
8
17
27
1.76
2729--2841
41
2.8
41
75
12
117
45
7
19
28
1.76
3057--3638
39
15.4
38
81
10
528
45
8
20
25
1.79
3057--3638
74
7.7
76
81
9
556
45
8
20
25
1.79
3046--3638
226
2.6
224
85
7
751
45
8
20
25
1.79
3066--3650
152
3.8
152
80
9
420
45
8
20
25
1.78
3444--3737
37
7.9
37
75
15
119
44
7
22
25
1.79
3728--3922
36
5.2
37
83
9
225
42
8
20
28
1.81
3765--3920
78
2.0
78
89
2
242
42
8
20
28
1.82
11264--11294
8
3.8
8
91
8
53
0
16
0
83
0.64
14592--14655
29
2.2
29
83
8
76
42
9
12
35
1.75
19709--19755
6
7.8
6
97
0
76
34
10
0
55
1.35

Tables:   1

The End!