Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009240.1 Corchorus capsularis cultivar CVL-1 contig09261, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3028
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:2252 original size:16 final size:16

Alignment explanation


    Indices: 2233--2293  Score: 81
    Period size: 16  Copynumber: 3.8  Consensus size: 16

       2223 ACCCGCCCGA

                          * 
       2233 ACCCGAACCCGAAATT
          1 ACCCGAACCCGAAAAT

                            
       2249 ACCCGAACCCGAAAAT
          1 ACCCGAACCCGAAAAT

                              
       2265 ACCCGAACCCGAGACAAT
          1 ACCCGAACCCGA-A-AAT

                         
       2283 --CCGAACCCGAA
          1 ACCCGAACCCGAA

       2294 CCCGACCCGA


Statistics
Matches: 42,  Mismatches: 1, Indels: 5
        0.88            0.02        0.10

Matches are distributed among these distances:
  15    1  0.02
  16   37  0.88
  17    1  0.02
  18    3  0.07

ACGTcount: A:0.39, C:0.39, G:0.15, T:0.07


Consensus pattern (16 bp):   
ACCCGAACCCGAAAAT

Done.