Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009241.1 Corchorus capsularis cultivar CVL-1 contig09262, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7452
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:5492 original size:20 final size:19

Alignment explanation


    Indices: 5467--5509  Score: 59
    Period size: 20  Copynumber: 2.2  Consensus size: 19

       5457 AAAAAGAGCA

                               
       5467 CCAATTTGCAAATCAAATG
          1 CCAATTTGCAAATCAAATG

                     *     *    
       5486 TCCAATTTGTAAATCTAATG
          1 -CCAATTTGCAAATCAAATG

                
       5506 CCAA
          1 CCAA

       5510 GTGTAAAATA


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  19    4  0.19
  20   17  0.81

ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30


Consensus pattern (19 bp):   
CCAATTTGCAAATCAAATG
Done.