Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009244.1 Corchorus capsularis cultivar CVL-1 contig09265, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20187

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3152--3240
43
2.1
43
95
0
160
40
11
21
26
1.87
13607--13666
31
2.0
30
84
12
79
31
11
5
51
1.60
13953--14054
22
4.6
22
76
4
98
40
10
16
32
1.83
14154--14675
22
23.7
22
67
16
127
38
9
15
36
1.80
14158--14296
46
3.0
45
75
11
140
46
8
15
30
1.75
14327--14428
23
4.5
23
80
8
93
36
8
13
41
1.76
14480--14568
45
2.0
45
82
4
108
32
8
16
41
1.80
14660--14767
40
2.7
40
81
8
121
47
7
9
36
1.64
14930--14967
11
3.5
11
89
10
51
39
0
2
57
1.12
18170--18224
18
3.1
18
86
0
74
18
1
65
14
1.36
18169--18224
21
2.7
21
85
0
85
19
1
64
14
1.38
18308--18355
6
8.0
6
83
0
51
14
2
66
16
1.34
18295--18355
21
2.9
21
82
0
77
18
1
63
16
1.38
18305--18351
24
2.0
24
95
0
85
14
2
68
14
1.31
18357--18405
24
2.0
24
92
0
80
14
18
40
26
1.89
18422--18474
9
5.9
9
77
0
52
13
1
66
18
1.34
18425--18474
12
4.2
12
78
0
55
12
2
66
20
1.34
18425--18477
18
2.9
18
82
0
70
13
1
66
18
1.34
18535--18592
21
2.8
21
83
0
71
15
5
62
17
1.50
18542--18597
21
2.7
21
85
0
76
14
5
66
14
1.42

Tables:   1

The End!