Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009245.1 Corchorus capsularis cultivar CVL-1 contig09266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45580

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6493--6527
3
11.3
3
93
6
61
0
34
0
65
0.93
7085--7149
32
2.0
32
84
0
85
27
7
13
50
1.69
8611--8733
63
2.0
63
98
0
237
30
10
6
52
1.61
8849--8885
18
2.0
20
84
10
51
37
8
13
40
1.74
13588--13622
2
18.0
2
94
5
63
48
0
0
51
1.00
14743--14771
14
2.0
15
93
6
51
27
13
13
44
1.82
15385--15459
15
4.8
15
73
17
55
41
20
37
1
1.60
32213--32246
14
2.5
13
86
9
50
20
8
2
67
1.31
33888--33959
32
2.2
32
95
0
126
25
16
5
52
1.65
35052--35202
72
2.1
72
88
0
221
25
7
22
43
1.80
39030--39081
21
2.5
21
83
0
68
30
25
26
17
1.97
43951--43980
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!