Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009247.1 Corchorus capsularis cultivar CVL-1 contig09268, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3458
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:418 original size:22 final size:22

Alignment explanation


    Indices: 390--434  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        380 GCATCTGCCA

                         *   *    
        390 TATGTATATATATGTATGTATG
          1 TATGTATATATATATATATATG

                                  
        412 TATGTATATATATATATATATG
          1 TATGTATATATATATATATATG

             
        434 T
          1 T

        435 GGTTTCTTAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51


Consensus pattern (22 bp):   
TATGTATATATATATATATATG
Done.