Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000925.1 Corchorus capsularis cultivar CVL-1 contig00925, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3310
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27


Found at i:2354 original size:46 final size:46

Alignment explanation


    Indices: 2279--2464  Score: 293
    Period size: 46  Copynumber: 4.0  Consensus size: 46

       2269 CAAAGAACTT

                                    *                     
       2279 TGTAAAAATTGGTTCTGATGGTGTAAAGAAATTTAGACCATCAGGA
          1 TGTAAAAATTGGTTCTGATGGTGTGAAGAAATTTAGACCATCAGGA

                                                *       *  
       2325 TG-AAGAAATTGGTTCTGATGGTGTGAAGAAATTTAAACCATCAAGA
          1 TGTAA-AAATTGGTTCTGATGGTGTGAAGAAATTTAGACCATCAGGA

                                               *          
       2371 TGTAAAAATTGGTTCTGATGGTGTGAAGAAATTTATACCATCAGGA
          1 TGTAAAAATTGGTTCTGATGGTGTGAAGAAATTTAGACCATCAGGA

                                *       *    *            
       2417 TGTAAAAATTGGTTCTGATGCTGTGAAGGAATTCAGACCATCAGGA
          1 TGTAAAAATTGGTTCTGATGGTGTGAAGAAATTTAGACCATCAGGA

              
       2463 TG
          1 TG

       2465 AAGGATTTGG


Statistics
Matches: 129,  Mismatches: 9, Indels: 4
        0.91            0.06        0.03

Matches are distributed among these distances:
  45    2  0.02
  46  125  0.97
  47    2  0.02

ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30


Consensus pattern (46 bp):   
TGTAAAAATTGGTTCTGATGGTGTGAAGAAATTTAGACCATCAGGA

Done.