Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009251.1 Corchorus capsularis cultivar CVL-1 contig09272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8495
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30


Found at i:5715 original size:6 final size:6

Alignment explanation


    Indices: 5704--5729  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       5694 GCAAAAAAAT

                                          
       5704 TACTAG TACTAG TACTAG TACTAG TA
          1 TACTAG TACTAG TACTAG TACTAG TA

       5730 TAATAATCAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Consensus pattern (6 bp):   
TACTAG

Found at i:8092 original size:2 final size:2

Alignment explanation


    Indices: 8085--8109  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       8075 AAATAAATAA

                                                 
       8085 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       8110 AGTTTCGTTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.