Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009252.1 Corchorus capsularis cultivar CVL-1 contig09273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49313

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13733--13778
4
11.8
4
88
4
67
21
26
2
50
1.60
13406--13754
171
2.0
174
86
3
490
36
16
6
41
1.73
22053--22141
39
2.3
39
94
0
151
15
14
14
55
1.70
24859--24904
23
2.0
23
95
0
83
39
15
8
36
1.78
29667--29855
94
2.0
94
93
2
328
43
14
15
26
1.85
31546--31596
17
3.1
16
83
13
59
23
19
21
35
1.96
32115--32211
27
3.7
26
84
6
124
16
12
14
56
1.67
32186--32261
33
2.3
34
84
6
93
18
11
22
47
1.81
32541--32582
22
1.9
22
95
0
75
42
26
16
14
1.86
33589--33618
14
2.1
14
93
0
51
53
30
0
16
1.44
34957--35014
24
2.3
26
85
8
77
20
12
3
63
1.42
36001--36027
14
1.9
14
100
0
54
44
11
0
44
1.39
38542--38573
2
16.0
2
100
0
64
50
0
0
50
1.00
41290--41403
59
1.9
59
87
3
167
31
25
8
34
1.86
41406--41436
15
2.1
15
100
0
62
58
19
0
22
1.40
42588--42643
25
2.1
27
93
6
98
33
7
7
51
1.56
44976--45013
2
19.0
2
100
0
76
50
0
0
50
1.00
45277--45386
52
2.1
52
98
0
211
33
19
10
37
1.85
48543--48615
2
35.5
2
81
10
85
43
8
0
47
1.33
49192--49243
26
2.0
26
82
10
63
40
9
1
48
1.47

Tables:   1

The End!