genome.fa.s9254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009254.1 Corchorus capsularis cultivar CVL-1 contig09275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94006

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8480--8513	17	1.9	18	88	5	52	38	38	14	8	1.78
8866--8906	22	2.0	22	85	9	59	14	36	31	17	1.90
11757--11826	30	2.3	31	90	5	106	28	17	4	50	1.65
11768--11833	30	2.1	31	88	5	98	31	15	4	48	1.65
12239--12305	22	3.0	22	80	8	73	29	5	20	43	1.76
12342--12731	22	17.7	21	68	15	150	40	10	15	33	1.81
12563--12753	44	4.4	44	75	6	149	42	9	13	33	1.78
12925--13094	22	7.7	22	70	9	103	33	11	17	38	1.85
12849--13085	44	5.4	45	72	9	134	34	12	15	37	1.84
12826--13171	22	15.6	22	68	11	93	37	11	13	36	1.81
15133--15169	19	2.0	18	89	5	56	29	21	8	40	1.82
23371--23407	19	2.0	18	89	5	56	29	21	8	40	1.82
25881--25937	22	2.6	22	91	2	89	19	1	35	43	1.61
26677--26835	22	7.2	22	76	11	123	37	15	10	37	1.81
26677--26850	44	4.0	43	76	10	149	35	16	10	37	1.83
26801--26848	21	2.3	20	86	13	62	31	20	10	37	1.87
29524--29581	29	2.0	29	83	16	75	50	1	8	39	1.43
34089--34117	2	14.5	2	100	0	58	48	0	0	51	1.00
36764--36792	10	3.0	10	95	5	51	20	41	6	31	1.79
41944--42017	20	3.7	20	78	7	87	12	37	27	22	1.90
49285--49309	2	12.5	2	100	0	50	52	0	0	48	1.00
55020--55073	21	2.6	21	96	0	99	12	31	29	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64338--64411	29	2.6	28	81	8	78	36	37	12	13	1.82
66486--66516	8	3.9	8	91	0	53	51	22	22	3	1.62
73621--73768	75	2.0	75	89	0	224	37	9	20	31	1.85
74129--74189	11	5.3	11	78	16	61	77	0	21	1	0.86
74132--74196	19	3.4	18	77	14	60	76	0	21	1	0.86
74141--74196	26	2.1	27	93	3	96	76	0	23	0	0.78
74152--74195	20	2.1	21	84	16	56	79	0	20	0	0.73
74624--74666	21	2.0	22	90	4	70	62	0	20	16	1.32
74976--75025	9	5.3	9	80	7	55	78	0	22	0	0.76
74989--75019	16	1.9	16	93	0	53	80	0	19	0	0.71
74978--75025	19	2.6	17	81	15	51	79	0	20	0	0.74
74980--75034	26	2.2	26	87	9	78	76	0	21	1	0.88
75336--75436	50	2.0	50	90	0	157	35	16	12	34	1.87
76096--76535	70	6.4	69	89	4	567	25	28	18	27	1.98
76437--76645	106	1.9	109	90	4	336	26	28	17	26	1.98
76546--76687	69	2.1	67	86	5	196	27	27	17	27	1.98
77712--77948	35	6.7	35	86	7	318	33	17	8	40	1.81
77712--77991	70	3.9	70	83	9	343	33	17	9	39	1.82
77712--77997	144	2.0	144	86	6	402	32	17	9	39	1.82
77894--77976	35	2.3	36	83	2	105	31	20	14	33	1.93
82026--82102	33	2.3	33	84	0	100	22	9	23	45	1.80
82046--82133	33	2.7	32	82	8	97	27	9	21	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82115--82202	33	2.7	33	87	0	122	31	10	17	40	1.82
82113--82228	33	3.6	31	80	5	117	31	9	18	40	1.82

Tables:   1

The End!