Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009256.1 Corchorus capsularis cultivar CVL-1 contig09277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6636
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:4542 original size:15 final size:15

Alignment explanation


    Indices: 4501--4533  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       4491 TCGTTGGCCT

                           
       4501 CAGCACCCATGTCGC
          1 CAGCACCCATGTCGC

                           
       4516 CAGCACCCATGTCGC
          1 CAGCACCCATGTCGC

               
       4531 CAG
          1 CAG

       4534 TGCCCATGTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.21, C:0.45, G:0.21, T:0.12


Consensus pattern (15 bp):   
CAGCACCCATGTCGC

Found at i:4626 original size:21 final size:20

Alignment explanation


    Indices: 4577--4626  Score: 55
    Period size: 21  Copynumber: 2.4  Consensus size: 20

       4567 CCAGCTGGGG

                           * *  
       4577 GCCCATGTGGTATGCTTGGC
          1 GCCCATGTGGTATGCCTCGC

                        *        
       4597 GCCCTATGTGGTTTGCCTCGC
          1 GCCC-ATGTGGTATGCCTCGC

                     
       4618 GACCCATGT
          1 G-CCCATGT

       4627 CCTCCAGTGC


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  20    4  0.16
  21   18  0.72
  22    3  0.12

ACGTcount: A:0.10, C:0.30, G:0.30, T:0.30


Consensus pattern (20 bp):   
GCCCATGTGGTATGCCTCGC
Done.