genome.fa.s9257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009257.1 Corchorus capsularis cultivar CVL-1 contig09278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85541

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4377--4428	24	2.2	24	96	0	95	63	3	28	3	1.30
5006--5059	24	2.2	24	93	0	90	48	11	33	7	1.67
6451--6527	32	2.4	32	86	2	102	22	28	23	25	1.99
6576--6646	32	2.2	32	92	0	115	25	25	25	23	2.00
6323--6784	142	3.2	143	88	6	636	25	22	20	31	1.98
10650--10688	20	2.0	20	89	0	60	41	20	10	28	1.85
11176--11276	27	3.7	27	85	2	112	44	26	14	13	1.83
13005--13087	36	2.3	36	93	2	141	31	12	15	40	1.84
26621--26729	41	2.7	41	92	5	179	51	7	12	28	1.67
26752--27220	41	11.9	41	78	9	480	45	11	17	26	1.82
26782--27248	80	5.9	80	80	10	543	44	11	17	26	1.83
26782--27248	121	4.0	119	82	10	487	44	11	17	26	1.83
27246--27601	41	8.7	41	82	4	414	43	10	17	28	1.81
27145--27338	101	1.9	101	89	4	302	43	10	18	28	1.82
27107--27379	142	1.9	142	88	3	415	42	11	17	28	1.84
27246--27602	123	2.9	122	85	5	486	43	10	17	28	1.82
27635--27728	41	2.3	41	94	0	161	47	9	21	21	1.78
27730--27850	32	3.7	32	82	4	134	43	5	22	28	1.76
27703--27847	68	2.2	67	81	9	174	46	6	21	26	1.75
34464--34708	122	2.0	122	94	0	427	26	22	18	32	1.97
35531--35753	35	6.3	35	87	2	268	38	17	7	36	1.78
36371--36421	23	2.3	23	96	3	95	45	11	13	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36371--36428	23	2.6	23	91	2	82	46	10	15	27	1.78
36702--36938	80	3.0	80	91	0	368	32	25	15	26	1.95
36864--37035	89	1.9	88	82	5	213	31	25	13	29	1.93
38814--38898	29	2.9	29	80	7	91	36	22	22	18	1.95
45610--45642	14	2.4	14	95	5	59	60	0	12	27	1.32
47193--47219	2	13.5	2	100	0	54	48	0	0	51	1.00
52244--52489	37	6.6	37	77	7	187	30	16	32	20	1.94
52244--52489	74	3.3	73	82	6	275	30	16	32	20	1.94
52398--52453	19	3.0	19	72	12	62	26	16	35	21	1.94
52249--52489	111	2.2	110	80	5	270	30	16	32	20	1.95
57615--57639	13	1.9	13	100	0	50	24	8	28	40	1.83
57959--58004	22	2.1	22	87	0	65	41	10	26	21	1.86
59935--59980	15	2.9	16	77	6	58	41	30	15	13	1.85
61370--61408	6	6.5	6	96	0	69	56	15	0	28	1.40
61370--61413	18	2.4	18	88	0	70	56	15	2	25	1.51
62343--62367	10	2.5	10	100	0	50	24	8	20	48	1.76
66210--66306	35	2.8	35	87	0	149	25	23	14	36	1.93
66948--67024	37	2.0	38	92	7	129	37	20	9	32	1.84
67607--67717	54	2.1	54	89	1	170	38	12	18	29	1.88
67738--67794	29	2.0	29	89	0	87	35	15	22	26	1.94
67804--67887	33	2.5	33	90	0	123	28	17	21	32	1.96
67932--68004	33	2.2	33	90	2	112	47	4	28	19	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69855--69910	26	2.2	26	93	0	94	50	23	8	17	1.74
70509--71301	324	2.4	324	93	1	1313	36	17	16	29	1.92
71088--71177	45	2.0	45	95	0	162	24	22	20	33	1.97
72361--72403	2	21.5	2	100	0	86	51	48	0	0	1.00
72403--72428	2	13.0	2	100	0	52	50	0	0	50	1.00
73736--73895	40	4.0	40	94	0	275	38	30	11	20	1.88
78636--78738	52	2.0	52	96	3	190	26	9	17	46	1.79
78645--78755	52	2.1	52	88	3	161	28	9	16	45	1.77
81151--81203	27	2.0	27	88	0	79	30	35	1	32	1.69
81338--81364	11	2.5	11	100	0	54	44	7	0	48	1.31
81842--81891	25	2.0	26	92	4	84	52	4	6	38	1.45
82012--82077	27	2.4	28	80	14	75	45	3	9	42	1.51
84097--84128	16	2.0	16	93	0	55	43	28	18	9	1.81

Tables:   1

The End!