Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009261.1 Corchorus capsularis cultivar CVL-1 contig09282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29698

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64--138
32
2.3
33
84
6
91
14
42
34
8
1.75
129--216
33
2.7
33
83
3
115
11
34
38
15
1.84
2535--2580
19
2.4
19
85
7
58
67
0
2
30
1.03
2670--2705
19
1.9
20
88
11
58
69
0
0
30
0.89
2793--2817
11
2.3
11
100
0
50
28
52
0
20
1.47
3513--4051
136
4.0
136
86
2
717
38
17
12
31
1.87
5394--5466
23
3.3
23
86
7
114
32
1
8
57
1.37
5393--5458
21
3.0
21
85
8
96
30
1
9
59
1.38
5641--5685
12
3.6
12
81
6
54
60
2
6
31
1.35
5636--5701
24
2.7
24
80
15
73
57
3
9
30
1.45
8951--9086
68
2.0
68
92
0
227
19
31
11
37
1.88
9246--9270
13
1.9
13
100
0
50
32
16
16
36
1.90
9980--10024
2
22.5
2
86
0
63
42
0
6
51
1.28
11242--11452
22
9.6
22
78
6
178
41
18
8
32
1.80
11241--11459
44
5.0
44
77
2
208
40
18
8
32
1.81
11242--11452
66
3.2
65
80
9
223
41
18
8
32
1.80
11571--11630
22
2.5
23
78
13
68
33
13
8
45
1.73
11591--11823
22
10.6
22
72
7
134
34
12
10
42
1.78
11593--11823
66
3.5
66
77
8
195
35
12
10
41
1.77
13179--13325
22
6.6
23
75
5
72
37
17
9
36
1.82
13411--13471
22
2.8
22
73
14
54
29
21
6
42
1.78
13503--13562
22
2.5
23
78
13
68
33
11
10
45
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13523--13643
22
5.5
22
74
3
91
35
11
8
44
1.71
13529--13643
44
2.6
44
78
8
108
36
11
7
44
1.69
13712--13745
14
2.5
13
95
4
59
91
0
0
8
0.43
14294--14346
5
10.8
5
85
4
72
58
0
18
22
1.39
18079--18109
15
2.1
15
100
0
62
25
35
12
25
1.92
18936--19011
2
42.5
2
71
21
53
47
1
0
51
1.09
18934--19011
12
6.8
12
76
14
67
47
1
0
51
1.09
18941--19013
31
2.3
31
88
4
101
47
1
0
50
1.09
23580--24095
257
2.0
257
98
0
1005
26
22
20
30
1.98

Tables:   1

The End!