Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009262.1 Corchorus capsularis cultivar CVL-1 contig09283, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49079

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3117--3154
20
1.9
20
100
0
76
47
7
15
28
1.74
8705--8731
3
9.0
3
100
0
54
0
33
0
66
0.92
21034--21089
29
1.9
29
92
0
94
35
8
17
37
1.82
25273--25435
87
1.9
87
84
5
222
30
7
25
37
1.83
27441--27469
2
14.5
2
100
0
58
51
0
0
48
1.00
35046--35084
2
20.0
2
84
5
53
0
43
5
51
1.24
35030--35081
27
2.0
27
88
7
81
0
36
7
55
1.29
39116--39191
39
2.0
38
97
2
143
40
10
13
35
1.79
39123--39208
39
2.3
39
88
6
124
41
11
11
34
1.78
40036--40351
159
2.0
159
90
0
497
31
15
25
28
1.95
46096--46131
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!