Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009265.1 Corchorus capsularis cultivar CVL-1 contig09286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68088

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3289--3336
25
1.9
25
95
0
87
22
2
31
43
1.65
7569--7608
3
13.3
3
100
0
80
67
0
0
32
0.91
11927--11956
2
15.5
2
93
6
53
50
0
0
50
1.00
12887--12913
3
9.0
3
100
0
54
33
66
0
0
0.92
17168--17252
44
1.9
44
97
0
161
32
10
4
51
1.57
22181--22207
14
1.9
14
100
0
54
11
14
37
37
1.82
22438--22604
32
5.2
32
85
5
210
13
40
31
13
1.84
23059--23154
16
6.0
16
79
4
95
4
11
31
53
1.56
23059--23148
32
2.8
31
86
6
126
3
11
31
54
1.52
23207--23236
15
1.9
16
93
6
53
0
13
40
46
1.43
27234--27675
166
2.7
163
84
4
557
38
16
14
29
1.89
27742--27768
2
13.5
2
100
0
54
48
0
0
51
1.00
38337--38386
26
1.9
26
87
0
73
26
16
10
48
1.77
40999--41025
13
2.1
13
100
0
54
7
22
7
62
1.46
45474--45524
21
2.4
21
87
6
68
23
21
9
45
1.82
45909--45951
18
2.3
18
81
14
52
81
11
0
6
0.87
50010--50045
2
18.0
2
100
0
72
50
0
50
0
1.00
53697--53726
11
2.9
10
90
9
51
20
6
23
50
1.71
55424--55459
18
1.9
19
88
5
56
13
11
0
75
1.06
64532--64709
93
1.9
93
94
2
313
50
1
14
33
1.50
66476--66520
22
2.0
22
91
0
72
44
15
6
33
1.73
67185--67229
21
2.0
23
87
8
67
64
2
33
0
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67685--67711
13
2.1
13
100
0
54
44
14
0
40
1.46

Tables:   1

The End!