Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009266.1 Corchorus capsularis cultivar CVL-1 contig09287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35554

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179--219
21
2.0
21
95
0
73
9
17
7
65
1.44
2214--2658
168
2.7
165
86
2
622
40
17
14
28
1.88
2725--2751
2
13.5
2
100
0
54
51
0
0
48
1.00
3338--3426
45
2.0
45
88
0
133
25
22
19
32
1.97
3873--3903
16
1.9
16
100
0
62
35
0
12
51
1.40
16885--16914
2
15.0
2
100
0
60
50
0
0
50
1.00
20803--20888
16
5.4
15
72
18
50
33
37
16
12
1.87
20795--20918
32
3.9
32
77
4
106
32
37
16
12
1.87
20996--21064
22
3.2
22
65
19
63
31
14
0
53
1.41
20976--21077
43
2.4
43
100
0
204
35
13
0
50
1.42
24212--24242
13
2.5
13
94
5
55
35
16
22
25
1.94
25909--25966
20
3.1
19
73
22
59
36
17
22
24
1.95
29382--29415
16
2.2
16
89
5
52
29
2
8
58
1.43

Tables:   1

The End!