Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009268.1 Corchorus capsularis cultivar CVL-1 contig09289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3106
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:2881 original size:20 final size:20

Alignment explanation


    Indices: 2856--2896  Score: 73
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       2846 CGTTTTGGGC

                                
       2856 TTTAAACTTGGGCTTTCGGG
          1 TTTAAACTTGGGCTTTCGGG

                            *   
       2876 TTTAAACTTGGGCTTTTGGG
          1 TTTAAACTTGGGCTTTCGGG

             
       2896 T
          1 T

       2897 AGTAGCTTTG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.15, C:0.12, G:0.29, T:0.44


Consensus pattern (20 bp):   
TTTAAACTTGGGCTTTCGGG
Done.