Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009271.1 Corchorus capsularis cultivar CVL-1 contig09292, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2613
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:2012 original size:21 final size:21

Alignment explanation


    Indices: 1988--2036  Score: 57
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1978 TCTAACTAAG

                    *             
       1988 TCTGATTTGAAT-TTGAAAACC
          1 TCTGATTTAAATCTTGAAAA-C

                                 
       2009 TCTGA-TTAAATCTTGAAAAC
          1 TCTGATTTAAATCTTGAAAAC

                    
       2029 TCTTGATT
          1 TC-TGATT

       2037 ATCTATTTTA


Statistics
Matches: 24,  Mismatches: 1, Indels: 5
        0.80            0.03        0.17

Matches are distributed among these distances:
  20    8  0.33
  21   15  0.62
  22    1  0.04

ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41


Consensus pattern (21 bp):   
TCTGATTTAAATCTTGAAAAC
Done.