Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009272.1 Corchorus capsularis cultivar CVL-1 contig09293, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18996
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:11883 original size:12 final size:12

Alignment explanation


    Indices: 11866--11898  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

      11856 CCGGTTGCCC

                        
      11866 CATGCGATGTCA
          1 CATGCGATGTCA

                       *
      11878 CATGCGATGTCG
          1 CATGCGATGTCA

                     
      11890 CATGCGATG
          1 CATGCGATG

      11899 GTCGGATATG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24


Consensus pattern (12 bp):   
CATGCGATGTCA

Found at i:15655 original size:15 final size:16

Alignment explanation


    Indices: 15635--15668  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

      15625 GATTGCTTTC

                         *  
      15635 TTAGTTA-ATTTACTT
          1 TTAGTTAGATTTAATT

                            
      15650 TTAGTTAGATTTAATT
          1 TTAGTTAGATTTAATT

               
      15666 TTA
          1 TTA

      15669 ATTCTTCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59


Consensus pattern (16 bp):   
TTAGTTAGATTTAATT

Done.