Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009275.1 Corchorus capsularis cultivar CVL-1 contig09296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26952

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
983--1018
19
1.9
18
88
5
54
41
2
22
33
1.68
3153--3246
44
2.2
44
86
5
138
32
14
11
40
1.83
7164--7224
29
2.1
29
84
0
77
52
13
9
24
1.70
12475--12558
42
2.0
42
90
0
132
21
41
27
9
1.84
12511--12541
12
2.6
12
94
0
53
16
38
32
12
1.86
14543--14649
33
3.2
33
85
2
135
23
39
28
8
1.84
17076--17196
33
3.7
32
88
8
145
8
25
47
19
1.77
17076--17218
66
2.2
66
83
7
175
9
26
44
19
1.80
17076--17213
33
4.2
33
83
9
140
8
27
44
18
1.79
21359--21392
8
4.1
8
85
7
50
58
14
2
23
1.50
26842--26883
21
2.0
21
95
0
75
23
30
33
11
1.91
26863--26946
33
2.5
33
86
3
116
21
35
30
11
1.90

Tables:   1

The End!