Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009278.1 Corchorus capsularis cultivar CVL-1 contig09299, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60331

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65--131
30
2.2
31
89
2
100
49
8
16
25
1.74
73--132
30
2.0
30
93
3
102
48
6
16
28
1.71
169--373
107
1.9
109
92
2
351
52
6
16
24
1.66
169--373
54
3.8
53
84
7
254
52
6
16
24
1.66
559--851
22
13.6
21
71
12
168
55
6
19
17
1.64
611--950
43
7.7
42
75
12
247
55
7
19
17
1.64
599--984
22
17.6
20
70
17
143
54
6
19
18
1.66
831--884
15
3.7
15
73
9
58
57
7
18
16
1.62
866--984
21
5.5
21
74
16
93
52
6
19
21
1.69
754--961
116
1.8
114
80
4
247
55
8
17
18
1.67
3674--3713
16
2.5
16
87
0
53
32
7
17
42
1.77
3745--3798
28
1.9
28
92
0
90
42
9
14
33
1.78
3864--3889
12
2.2
12
100
0
52
38
7
23
30
1.83
7918--8010
48
2.0
47
93
6
163
59
19
6
15
1.57
13171--13244
16
4.7
16
81
8
89
4
16
41
37
1.67
13200--13292
6
15.5
6
68
16
50
4
19
43
33
1.71
13171--13246
32
2.4
31
91
2
116
3
17
40
38
1.68
13245--13288
17
2.6
17
92
0
70
6
25
45
22
1.77
15512--15555
19
2.3
19
100
0
88
9
6
52
31
1.59
23794--23827
8
4.1
8
85
7
50
58
14
2
23
1.50
23901--23930
15
2.0
15
93
0
51
83
0
0
16
0.65
25419--25523
33
3.2
32
78
5
111
26
9
17
46
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30090--30120
12
2.6
12
89
0
53
58
0
29
12
1.35
31294--31336
10
4.3
10
82
8
52
27
23
11
37
1.89
34039--34096
24
2.4
25
94
2
100
25
13
18
41
1.88
36206--36239
2
17.5
2
93
6
61
50
0
0
50
1.00
36859--37013
70
2.2
70
89
2
231
50
0
12
36
1.45
37120--37249
62
2.1
62
91
0
206
49
0
11
39
1.39
36857--37357
244
2.0
246
94
3
882
47
5
12
34
1.64
37983--38010
2
14.0
2
100
0
56
50
0
0
50
1.00
46347--46396
16
3.1
16
77
11
66
14
10
38
38
1.79
46340--46447
32
3.4
32
89
0
162
14
11
37
37
1.82
46590--46628
20
2.0
20
85
10
53
35
5
5
53
1.45
46646--46735
16
5.7
15
75
11
72
6
11
32
50
1.64
46646--46729
32
2.6
32
84
0
114
5
10
32
51
1.61
47208--47279
2
36.0
2
78
0
63
4
8
47
40
1.53
52527--52562
18
1.9
19
88
5
56
50
5
8
36
1.56

Tables:   1

The End!