Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009279.1 Corchorus capsularis cultivar CVL-1 contig09300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33210

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
242--279
19
2.0
20
85
15
53
28
5
2
63
1.30
445--605
22
7.3
22
75
9
105
33
9
18
39
1.82
710--775
22
3.0
21
76
6
62
34
6
19
39
1.77
815--1052
22
10.8
22
75
11
148
42
9
13
34
1.78
860--1049
44
4.3
44
75
7
165
43
8
13
34
1.75
860--1052
88
2.2
87
79
6
201
43
8
13
34
1.75
861--1027
66
2.5
66
77
8
171
42
8
13
34
1.76
1133--1180
19
2.5
19
96
3
87
47
10
16
25
1.78
1104--1731
22
29.0
22
69
13
155
38
9
16
35
1.81
1339--1423
23
3.7
23
85
1
109
41
5
12
40
1.68
4277--4306
2
15.0
2
100
0
60
50
0
0
50
1.00
4798--4856
29
2.1
28
87
3
82
35
11
25
27
1.91
6631--6676
21
2.1
22
88
4
67
13
39
8
39
1.75
6957--7018
11
4.7
14
69
27
55
32
1
9
56
1.41
6957--7024
26
2.6
26
86
9
102
33
1
10
54
1.43
7060--7093
15
2.3
15
90
5
52
26
0
35
38
1.57
8016--8188
31
5.5
31
81
1
166
19
20
26
34
1.96
10787--10951
31
5.5
30
65
22
96
36
18
17
27
1.93
10791--10955
60
2.8
60
88
1
242
36
18
17
27
1.93
10984--11149
31
5.5
30
70
16
128
25
19
20
34
1.96
10985--11146
60
2.7
60
91
0
243
25
19
19
35
1.95
14746--14776
2
16.0
2
93
6
55
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24788--24832
12
4.0
12
88
11
69
51
8
6
33
1.59
24788--24832
23
2.0
22
91
4
72
51
8
6
33
1.59
24629--24993
190
1.9
190
95
1
660
33
11
16
37
1.85
25781--25819
20
1.9
20
89
5
60
58
7
2
30
1.39
26128--26566
166
2.6
165
84
1
547
40
16
13
29
1.87
26955--26994
20
2.0
20
85
4
55
77
0
12
10
0.99
28851--29102
67
3.6
70
81
8
275
40
16
19
23
1.91
32616--32644
9
3.3
9
90
9
51
34
10
0
55
1.34
32610--32644
17
2.1
17
94
0
61
31
11
2
54
1.51
32635--32752
35
3.3
35
70
15
105
34
17
8
38
1.80
32659--32698
21
1.9
21
89
0
62
42
22
2
32
1.67
32601--32773
73
2.4
72
84
3
220
34
17
6
41
1.75
32708--33021
56
5.6
56
94
0
529
38
16
7
37
1.77
32747--32920
35
4.8
35
72
17
129
38
17
6
37
1.75
32790--32941
21
7.9
20
70
17
117
40
17
4
37
1.70
32582--32829
129
2.0
125
86
4
345
35
18
6
39
1.76
32780--32969
21
10.3
17
67
21
71
40
16
6
36
1.75

Tables:   1

The End!